Variant report

Variant	nsv975363
Chromosome Location	chr11:73411321-73426936
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73418211..73420499-chr11:73425095..73426709,2	MCF-7	breast:
2	chr11:73421710..73424009-chr11:73461398..73464221,2	K562	blood:
3	chr11:73415553..73417778-chr11:73420155..73422839,2	MCF-7	breast:
4	chr11:73415553..73417778-chr11:73420155..73422839,2	MCF-7	breast:
5	chr1:10002595..10003396-chr11:73419578..73420422,2	NB4	blood:
6	chr11:73422546..73424731-chr11:73470843..73472960,2	K562	blood:
7	chr11:73426792..73429606-chr11:73433522..73435254,2	MCF-7	breast:
8	chr11:73418211..73420499-chr11:73425095..73426709,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175582	chromatin interactions
ENSG00000228150	chromatin interactions
ENSG00000162441	chromatin interactions
ENSG00000256034	chromatin interactions

Extended variants
information (count: 620 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:620 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527570927	chr11:73411394-73411395	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs547842276	chr11:73411466-73411467	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs370905658	chr11:73411628-73411629	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs11458879	chr11:73411644-73411645	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs6592530	chr11:73411656-73411657	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs75417363	chr11:73411658-73411659	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs570858895	chr11:73411664-73411665	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs550207678	chr11:73411665-73411666	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs138081019	chr11:73411666-73411667	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs570159053	chr11:73411667-73411668	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs59223959	chr11:73411668-73411669	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs568093211	chr11:73411669-73411670	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536020213	chr11:73411678-73411679	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs148528212	chr11:73411702-73411703	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs549495651	chr11:73411719-73411720	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs566059772	chr11:73411722-73411723	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs534982238	chr11:73411783-73411784	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs553389102	chr11:73411880-73411881	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538569094	chr11:73411892-73411893	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs576385095	chr11:73411909-73411910	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12576616	chr11:73411927-73411928	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
22	rs373350431	chr11:73411930-73411931	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs532543386	chr11:73411940-73411941	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs572075797	chr11:73411962-73411963	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs142855830	chr11:73412084-73412085	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs187555687	chr11:73412248-73412249	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561847272	chr11:73412251-73412252	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs72974866	chr11:73412291-73412292	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs541324206	chr11:73412313-73412314	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs550894400	chr11:73412317-73412318	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs6592531	chr11:73412354-73412355	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs533313259	chr11:73412357-73412358	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550030060	chr11:73412387-73412388	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs576694827	chr11:73412398-73412399	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs151040683	chr11:73412409-73412410	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs59986784	chr11:73412481-73412482	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs549599604	chr11:73412487-73412488	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs565925668	chr11:73412518-73412519	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs79287738	chr11:73412532-73412533	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs551609235	chr11:73412553-73412554	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs570133654	chr11:73412598-73412599	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs539382160	chr11:73412607-73412608	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555871991	chr11:73412616-73412617	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs140003795	chr11:73412651-73412652	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200061884	chr11:73412704-73412705	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201009038	chr11:73412705-73412706	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376165470	chr11:73412722-73412723	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs376580302	chr11:73412737-73412738	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192999030	chr11:73412751-73412752	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs1880642	chr11:73412768-73412769	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Glioblastoma multiforme	21080181	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chordoma	21602918	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	18172304	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Myelofibrosis	22110671	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Breast cancer	16620391	CNVD
Multiple myeloma	17550852	CNVD
Neuroblastoma	18923191	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	16616336	CNVD
Urothelial cell carcinoma	18451213	CNVD
Leukoplakia	24403051	CNVD
Prostate cancer	17217626	CNVD
Cancer	22429812	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	17142309	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:557 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73374400-73427200	Weak transcription	A549	lung
2	chr11:73375800-73416200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:73382200-73436000	Weak transcription	Small Intestine	intestine
4	chr11:73382200-73441200	Weak transcription	Stomach Mucosa	stomach
5	chr11:73382400-73421600	Weak transcription	Gastric	stomach
6	chr11:73383400-73427200	Weak transcription	Fetal Heart	heart
7	chr11:73384000-73427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:73385000-73449800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:73385800-73411400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:73389000-73445400	Weak transcription	Fetal Brain Male	brain
11	chr11:73389200-73416800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:73389200-73427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:73389200-73440200	Weak transcription	Right Ventricle	heart
14	chr11:73390800-73429600	Weak transcription	NHLF	lung
15	chr11:73391000-73433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:73392200-73411400	Weak transcription	Fetal Lung	lung
17	chr11:73394400-73430200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:73395600-73416200	Weak transcription	Brain Anterior Caudate	brain
19	chr11:73395800-73412600	Weak transcription	Thymus	Thymus
20	chr11:73396000-73411800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:73396000-73448000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:73396400-73411400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:73397800-73426600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:73399000-73412400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:73399600-73412400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:73400000-73416200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:73400200-73414600	Weak transcription	Ovary	ovary
28	chr11:73400400-73449400	Weak transcription	Psoas Muscle	Psoas
29	chr11:73400600-73412600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:73400600-73412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:73400600-73412800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:73400600-73412800	Weak transcription	Aorta	Aorta
33	chr11:73400600-73421600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:73400800-73412200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:73400800-73416200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:73400800-73422000	Weak transcription	Spleen	Spleen
37	chr11:73401000-73412600	Weak transcription	Esophagus	oesophagus
38	chr11:73401000-73412800	Weak transcription	HUVEC	blood vessel
39	chr11:73401000-73416400	Weak transcription	Fetal Kidney	kidney
40	chr11:73401200-73412200	Weak transcription	GM12878-XiMat	blood
41	chr11:73402000-73422200	Weak transcription	Hela-S3	cervix
42	chr11:73402600-73412600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:73404400-73420200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:73404400-73424200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:73404400-73427400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:73404800-73420400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr11:73405000-73412800	Weak transcription	Lung	lung
48	chr11:73405000-73421800	Weak transcription	Pancreas	Pancrea
49	chr11:73405200-73412000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:73405200-73414400	Weak transcription	Brain Germinal Matrix	brain

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