Variant report

Variant	rs1880642
Chromosome Location	chr11:73412768-73412769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10898933	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10898934	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11235903	0.89[EUR][1000 genomes]
rs1525750	0.92[EUR][1000 genomes]
rs1525751	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1670548	0.85[EUR][1000 genomes]
rs1723834	0.85[EUR][1000 genomes]
rs1723838	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1723839	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1723842	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1723844	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1723845	0.89[EUR][1000 genomes]
rs1723846	0.89[EUR][1000 genomes]
rs1723849	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1792157	0.85[EUR][1000 genomes]
rs1792195	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1792196	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1880643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1976914	0.85[EUR][1000 genomes]
rs1980346	0.82[AFR][1000 genomes]
rs2037706	0.89[EUR][1000 genomes]
rs2037709	0.92[EUR][1000 genomes]
rs2056649	0.96[EUR][1000 genomes]
rs2366944	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2462617	0.85[EUR][1000 genomes]
rs2511263	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2511265	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2511269	0.85[EUR][1000 genomes]
rs2515091	0.85[EUR][1000 genomes]
rs4548648	0.85[EUR][1000 genomes]
rs4944026	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944854	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4944857	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944859	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4944860	0.96[EUR][1000 genomes]
rs4944864	0.90[EUR][1000 genomes]
rs4944865	0.90[EUR][1000 genomes]
rs6592528	0.89[EUR][1000 genomes]
rs6592529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7396121	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932364	0.85[AFR][1000 genomes]
rs7942515	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940831	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9634024	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv390	chr11:73388188-73432899	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv975363	chr11:73411321-73426936	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73374400-73427200	Weak transcription	A549	lung
2	chr11:73375800-73416200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:73382200-73436000	Weak transcription	Small Intestine	intestine
4	chr11:73382200-73441200	Weak transcription	Stomach Mucosa	stomach
5	chr11:73382400-73421600	Weak transcription	Gastric	stomach
6	chr11:73383400-73427200	Weak transcription	Fetal Heart	heart
7	chr11:73384000-73427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:73385000-73449800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:73389000-73445400	Weak transcription	Fetal Brain Male	brain
10	chr11:73389200-73416800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:73389200-73427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:73389200-73440200	Weak transcription	Right Ventricle	heart
13	chr11:73390800-73429600	Weak transcription	NHLF	lung
14	chr11:73391000-73433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:73394400-73430200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:73395600-73416200	Weak transcription	Brain Anterior Caudate	brain
17	chr11:73396000-73448000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:73397800-73426600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:73400000-73416200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:73400200-73414600	Weak transcription	Ovary	ovary
21	chr11:73400400-73449400	Weak transcription	Psoas Muscle	Psoas
22	chr11:73400600-73412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:73400600-73412800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:73400600-73412800	Weak transcription	Aorta	Aorta
25	chr11:73400600-73421600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:73400800-73416200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:73400800-73422000	Weak transcription	Spleen	Spleen
28	chr11:73401000-73412800	Weak transcription	HUVEC	blood vessel
29	chr11:73401000-73416400	Weak transcription	Fetal Kidney	kidney
30	chr11:73402000-73422200	Weak transcription	Hela-S3	cervix
31	chr11:73404400-73420200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:73404400-73424200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:73404400-73427400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:73404800-73420400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr11:73405000-73412800	Weak transcription	Lung	lung
36	chr11:73405000-73421800	Weak transcription	Pancreas	Pancrea
37	chr11:73405200-73414400	Weak transcription	Brain Germinal Matrix	brain
38	chr11:73405200-73416200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:73405200-73416800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:73405200-73429600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:73405400-73416800	Weak transcription	K562	blood
42	chr11:73405400-73422000	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:73405400-73426400	Weak transcription	Brain Substantia Nigra	brain
44	chr11:73405800-73413000	Weak transcription	HMEC	breast
45	chr11:73406000-73412800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:73406400-73418600	Strong transcription	Placenta	Placenta
47	chr11:73406400-73419000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:73407000-73432000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:73407800-73418800	Strong transcription	Liver	Liver
50	chr11:73408200-73422800	Strong transcription	Osteobl	bone

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