Variant report

Variant	rs6592529
Chromosome Location	chr11:73398280-73398281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10898933	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10898934	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11235903	0.89[EUR][1000 genomes]
rs1466218	0.93[YRI][hapmap]
rs1525750	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1525751	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1621654	1.00[YRI][hapmap]
rs1670548	0.85[EUR][1000 genomes]
rs1670571	0.86[YRI][hapmap]
rs1723834	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs1723838	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1723839	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1723842	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1723844	1.00[ASW][hapmap];0.88[CEU][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1723845	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs1723846	0.89[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.89[EUR][1000 genomes]
rs1723849	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17310409	0.86[CEU][hapmap]
rs1792157	0.88[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs1792164	0.86[CEU][hapmap];0.93[YRI][hapmap]
rs1792186	0.93[YRI][hapmap]
rs1792195	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1792196	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1880642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1880643	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1976914	0.85[EUR][1000 genomes]
rs1980346	0.82[AFR][1000 genomes]
rs2008722	0.90[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs2037706	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2037709	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2056649	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2366944	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2462617	0.85[EUR][1000 genomes]
rs2511262	1.00[ASW][hapmap];0.92[LWK][hapmap];0.93[YRI][hapmap]
rs2511263	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2511265	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2511269	0.85[EUR][1000 genomes]
rs2511275	0.93[YRI][hapmap]
rs2512633	0.84[LWK][hapmap]
rs2515091	0.85[CEU][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes]
rs4548648	0.85[EUR][1000 genomes]
rs4944026	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944854	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4944857	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944859	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4944860	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4944864	0.90[EUR][1000 genomes]
rs4944865	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs594814	0.89[ASW][hapmap];0.85[LWK][hapmap]
rs610280	1.00[ASW][hapmap]
rs652229	1.00[ASW][hapmap]
rs6592528	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs7101957	0.81[TSI][hapmap]
rs7108695	1.00[CEU][hapmap]
rs7396121	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932364	0.87[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7942515	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940831	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9634024	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv390	chr11:73388188-73432899	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv19003	chr11:73394993-73398426	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73374400-73427200	Weak transcription	A549	lung
2	chr11:73375200-73404400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:73375800-73400000	Weak transcription	Lung	lung
4	chr11:73375800-73416200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:73376200-73398400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:73376600-73399200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:73376600-73400000	Weak transcription	Spleen	Spleen
8	chr11:73377000-73400000	Weak transcription	Psoas Muscle	Psoas
9	chr11:73381800-73400000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:73382200-73399000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:73382200-73436000	Weak transcription	Small Intestine	intestine
12	chr11:73382200-73441200	Weak transcription	Stomach Mucosa	stomach
13	chr11:73382400-73421600	Weak transcription	Gastric	stomach
14	chr11:73382800-73400400	Weak transcription	Pancreas	Pancrea
15	chr11:73383200-73399000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:73383400-73427200	Weak transcription	Fetal Heart	heart
17	chr11:73384000-73427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:73384800-73401800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:73385000-73449800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:73385600-73398800	Weak transcription	Aorta	Aorta
21	chr11:73385800-73411400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:73386600-73399400	Weak transcription	Esophagus	oesophagus
23	chr11:73386800-73399400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:73387400-73410800	Weak transcription	Colonic Mucosa	Colon
25	chr11:73389000-73399400	Weak transcription	Left Ventricle	heart
26	chr11:73389000-73445400	Weak transcription	Fetal Brain Male	brain
27	chr11:73389200-73398800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:73389200-73400200	Weak transcription	Fetal Kidney	kidney
29	chr11:73389200-73400800	Strong transcription	Fetal Intestine Small	intestine
30	chr11:73389200-73404800	Weak transcription	K562	blood
31	chr11:73389200-73410600	Weak transcription	Brain Angular Gyrus	brain
32	chr11:73389200-73416800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:73389200-73427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:73389200-73440200	Weak transcription	Right Ventricle	heart
35	chr11:73389400-73398600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:73389400-73399000	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:73389400-73404800	Weak transcription	Brain Substantia Nigra	brain
38	chr11:73389600-73400400	Weak transcription	GM12878-XiMat	blood
39	chr11:73390200-73399200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:73390600-73398400	Weak transcription	HepG2	liver
41	chr11:73390600-73399200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:73390800-73399000	Weak transcription	NH-A	brain
43	chr11:73390800-73429600	Weak transcription	NHLF	lung
44	chr11:73391000-73398600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:73391000-73399000	Weak transcription	Dnd41	blood
46	chr11:73391000-73399400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:73391000-73433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr11:73391200-73398400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:73391200-73399800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:73391600-73398400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links