Variant report

Variant	rs2511262
Chromosome Location	chr11:73566340-73566341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73565085..73567966-chr11:73582133..73584937,2	K562	blood:
2	chr11:73563616..73566513-chr11:73584114..73587031,2	K562	blood:

Variant related genes	Relation type
ENSG00000181924	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1466218	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1531001	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1598044	0.93[AFR][1000 genomes]
rs1618529	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1621654	0.93[YRI][hapmap]
rs1623476	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1670538	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1670553	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1670555	0.91[AFR][1000 genomes]
rs1670560	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1670561	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1670571	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1670574	0.93[AFR][1000 genomes]
rs1723834	1.00[ASW][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs1723838	1.00[ASW][hapmap];0.92[LWK][hapmap];0.93[YRI][hapmap]
rs1723844	1.00[ASW][hapmap];0.93[YRI][hapmap]
rs1723845	1.00[ASW][hapmap];0.92[LWK][hapmap];0.93[YRI][hapmap]
rs1723846	0.89[ASW][hapmap];0.92[LWK][hapmap]
rs1723849	1.00[ASW][hapmap];0.92[LWK][hapmap];0.93[YRI][hapmap]
rs17244671	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17310409	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1792157	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs1792164	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1792185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1792186	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1792189	0.91[AFR][1000 genomes]
rs1792194	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1792197	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1792202	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1880643	1.00[ASW][hapmap];0.92[LWK][hapmap];0.93[YRI][hapmap]
rs2008722	0.90[ASW][hapmap];1.00[GIH][hapmap]
rs2444602	0.96[AFR][1000 genomes]
rs2462617	0.83[AFR][1000 genomes]
rs2511273	0.82[AFR][1000 genomes]
rs2511275	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2512633	0.91[LWK][hapmap]
rs2515090	0.82[AFR][1000 genomes]
rs2515091	0.86[AFR][1000 genomes]
rs2515095	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2886812	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2924504	1.00[AFR][1000 genomes]
rs3019137	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35133035	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4548648	0.83[AFR][1000 genomes]
rs4944854	0.93[YRI][hapmap]
rs4944859	1.00[ASW][hapmap];0.93[YRI][hapmap]
rs4944865	1.00[ASW][hapmap]
rs627627	1.00[AFR][1000 genomes]
rs651833	1.00[AFR][1000 genomes]
rs6592529	1.00[ASW][hapmap];0.92[LWK][hapmap];0.93[YRI][hapmap]
rs7480464	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7932364	0.93[YRI][hapmap]
rs935989	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9634024	0.93[YRI][hapmap]
rs9651759	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv983206	chr11:73565238-73580462	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73499600-73583800	Weak transcription	Aorta	Aorta
2	chr11:73500200-73574200	Weak transcription	Right Ventricle	heart
3	chr11:73500400-73571400	Weak transcription	Fetal Brain Male	brain
4	chr11:73500400-73583800	Weak transcription	Colonic Mucosa	Colon
5	chr11:73508400-73570600	Weak transcription	Psoas Muscle	Psoas
6	chr11:73508800-73573800	Weak transcription	Spleen	Spleen
7	chr11:73508800-73575400	Weak transcription	Gastric	stomach
8	chr11:73518400-73584000	Weak transcription	Pancreas	Pancrea
9	chr11:73533000-73580400	Weak transcription	Stomach Mucosa	stomach
10	chr11:73537400-73582600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:73539000-73577200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:73539200-73574200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:73539200-73583800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:73540000-73571200	Weak transcription	NHDF-Ad	bronchial
15	chr11:73540800-73577400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:73541600-73567000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:73541800-73574000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:73541800-73583600	Weak transcription	Esophagus	oesophagus
19	chr11:73542400-73577400	Weak transcription	HUVEC	blood vessel
20	chr11:73542600-73577200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:73548800-73582000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:73549400-73567000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:73549800-73567200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:73549800-73583600	Weak transcription	GM12878-XiMat	blood
25	chr11:73550000-73567000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:73550000-73567000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:73550000-73567000	Weak transcription	Primary B cells from cord blood	blood
28	chr11:73550000-73574000	Weak transcription	A549	lung
29	chr11:73550000-73577200	Weak transcription	HSMMtube	muscle
30	chr11:73550400-73574200	Weak transcription	HSMM	muscle
31	chr11:73550400-73577200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:73550400-73577200	Weak transcription	NH-A	brain
33	chr11:73550400-73582400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:73554200-73571200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:73554200-73574800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:73554400-73566800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:73554800-73575200	Weak transcription	Ovary	ovary
38	chr11:73555000-73567200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:73555000-73570800	Weak transcription	HepG2	liver
40	chr11:73555000-73571400	Weak transcription	Hela-S3	cervix
41	chr11:73555000-73577200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:73555600-73571600	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:73555600-73573800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:73556000-73570800	Weak transcription	Brain Germinal Matrix	brain
45	chr11:73556000-73570800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:73556200-73567000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:73556200-73570600	Weak transcription	Placenta	Placenta
48	chr11:73556200-73580400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:73556400-73567000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:73556400-73571400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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