Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr11:73661413-73661734	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:73661341-73661645	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
DNAJB13	TF binding region

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1466218	1.00[AFR][1000 genomes]
rs1531001	1.00[AFR][1000 genomes]
rs1598044	0.93[AFR][1000 genomes]
rs1618529	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1623476	1.00[AFR][1000 genomes]
rs1670538	0.96[AFR][1000 genomes]
rs1670553	0.93[AFR][1000 genomes]
rs1670555	0.91[AFR][1000 genomes]
rs1670560	1.00[AFR][1000 genomes]
rs1670561	1.00[AFR][1000 genomes]
rs1670571	0.96[AFR][1000 genomes]
rs1670574	0.93[AFR][1000 genomes]
rs1723834	0.83[AFR][1000 genomes]
rs1792157	0.86[AFR][1000 genomes]
rs1792164	0.95[AFR][1000 genomes]
rs1792185	0.96[AFR][1000 genomes]
rs1792186	1.00[AFR][1000 genomes]
rs1792189	0.91[AFR][1000 genomes]
rs1792197	1.00[AFR][1000 genomes]
rs1792202	0.96[AFR][1000 genomes]
rs2444602	0.96[AFR][1000 genomes]
rs2462617	0.83[AFR][1000 genomes]
rs2511262	1.00[AFR][1000 genomes]
rs2511273	0.82[AFR][1000 genomes]
rs2511275	0.93[AFR][1000 genomes]
rs2515090	0.82[AFR][1000 genomes]
rs2515091	0.86[AFR][1000 genomes]
rs2515095	0.96[AFR][1000 genomes]
rs2886812	1.00[AFR][1000 genomes]
rs2924504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3019137	1.00[AFR][1000 genomes]
rs35133035	0.88[AFR][1000 genomes]
rs4548648	0.83[AFR][1000 genomes]
rs625098	0.81[EUR][1000 genomes]
rs627627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs628901	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs674304	0.92[EUR][1000 genomes]
rs7480464	0.96[AFR][1000 genomes]
rs825871	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935989	0.86[AFR][1000 genomes]
rs9651759	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
3	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73650200-73666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:73650200-73667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:73657600-73662000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:73658200-73662000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:73658600-73662000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73660600-73667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:73660800-73662000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:73661000-73661800	Enhancers	HepG2	liver

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