Variant report

Variant	rs1792189
Chromosome Location	chr11:73649992-73649993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73649521..73651075-chr11:73655497..73658125,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1466218	0.91[AFR][1000 genomes]
rs1531001	0.91[AFR][1000 genomes]
rs1598044	0.84[AFR][1000 genomes]
rs1618529	0.84[AFR][1000 genomes]
rs1623476	0.91[AFR][1000 genomes]
rs1670538	0.91[AFR][1000 genomes]
rs1670553	0.84[AFR][1000 genomes]
rs1670555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1670560	0.91[AFR][1000 genomes]
rs1670561	0.91[AFR][1000 genomes]
rs1670571	0.91[AFR][1000 genomes]
rs1670574	0.98[AFR][1000 genomes]
rs1792157	0.81[AFR][1000 genomes]
rs1792164	0.89[AFR][1000 genomes]
rs1792185	0.91[AFR][1000 genomes]
rs1792186	0.91[AFR][1000 genomes]
rs1792197	0.91[AFR][1000 genomes]
rs1792202	0.87[AFR][1000 genomes]
rs2444602	0.94[AFR][1000 genomes]
rs2511262	0.91[AFR][1000 genomes]
rs2511273	0.87[AFR][1000 genomes]
rs2511275	0.91[AFR][1000 genomes]
rs2515090	0.83[AFR][1000 genomes]
rs2515091	0.81[AFR][1000 genomes]
rs2515095	0.87[AFR][1000 genomes]
rs2886812	0.91[AFR][1000 genomes]
rs2924504	0.91[AFR][1000 genomes]
rs3019137	0.91[AFR][1000 genomes]
rs35133035	0.80[AFR][1000 genomes]
rs627627	0.91[AFR][1000 genomes]
rs651833	0.91[AFR][1000 genomes]
rs7480464	0.91[AFR][1000 genomes]
rs935989	0.90[AFR][1000 genomes]
rs9651759	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73633200-73652400	Weak transcription	Small Intestine	intestine
2	chr11:73639000-73653000	Weak transcription	K562	blood
3	chr11:73639200-73650000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:73639400-73653200	Weak transcription	Gastric	stomach
5	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:73640400-73655000	Weak transcription	Brain Germinal Matrix	brain
7	chr11:73640400-73659200	Weak transcription	HepG2	liver
8	chr11:73640800-73652200	Weak transcription	Fetal Brain Female	brain
9	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
10	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:73642600-73652200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:73642600-73655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:73642600-73656200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:73642800-73653000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:73644000-73650000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:73644000-73653000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:73644200-73652200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:73645400-73655200	Weak transcription	Brain Anterior Caudate	brain
19	chr11:73645600-73655000	Weak transcription	Adipose Nuclei	Adipose
20	chr11:73645600-73655600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:73645800-73655400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:73646200-73650400	Weak transcription	Ovary	ovary
23	chr11:73646200-73653600	Weak transcription	Left Ventricle	heart
24	chr11:73646200-73654400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:73646200-73655000	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:73646400-73653600	Weak transcription	Liver	Liver
27	chr11:73648000-73650200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr11:73648000-73650600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:73648000-73650600	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr11:73649000-73650400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:73649600-73650200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:73649600-73650200	ZNF genes & repeats	HSMMtube	muscle
33	chr11:73649800-73650000	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr11:73649800-73650200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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