Variant report

Variant	rs1792202
Chromosome Location	chr11:73618444-73618445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73611050..73612927-chr11:73618390..73620563,2	K562	blood:
2	chr11:73616333..73618912-chr11:73619802..73622524,4	K562	blood:
3	chr11:73617245..73618912-chr11:73620792..73622524,2	K562	blood:
4	chr11:73616949..73618962-chr11:73623554..73626249,2	K562	blood:

Variant related genes	Relation type
ENSG00000175575	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1466218	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1531001	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1598044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1618529	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1621654	0.92[YRI][hapmap]
rs1623476	0.96[AFR][1000 genomes]
rs1670538	0.93[AFR][1000 genomes]
rs1670553	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1670555	0.87[AFR][1000 genomes]
rs1670560	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1670561	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1670571	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1670574	0.89[AFR][1000 genomes]
rs1723834	0.92[YRI][hapmap]
rs1723838	0.92[YRI][hapmap]
rs1723844	0.92[YRI][hapmap]
rs1723845	0.92[YRI][hapmap]
rs1723849	0.92[YRI][hapmap]
rs1792157	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs1792164	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1792185	0.93[AFR][1000 genomes]
rs1792186	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1792189	0.87[AFR][1000 genomes]
rs1792197	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2444602	0.93[AFR][1000 genomes]
rs2511262	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2511275	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2515091	0.83[AFR][1000 genomes]
rs2515095	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2632725	0.82[CEU][hapmap]
rs2886812	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2924504	0.96[AFR][1000 genomes]
rs3019137	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35133035	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4944859	0.92[YRI][hapmap]
rs625098	0.82[CEU][hapmap]
rs627627	0.96[AFR][1000 genomes]
rs651833	0.96[AFR][1000 genomes]
rs7480464	0.93[AFR][1000 genomes]
rs935989	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9634024	0.92[YRI][hapmap]
rs9651759	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73588800-73622000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:73588800-73623000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:73588800-73625200	Weak transcription	Small Intestine	intestine
4	chr11:73588800-73630000	Weak transcription	Colonic Mucosa	Colon
5	chr11:73588800-73630200	Weak transcription	HUVEC	blood vessel
6	chr11:73589000-73630200	Weak transcription	Fetal Brain Male	brain
7	chr11:73589400-73629200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:73596000-73640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:73601000-73640400	Weak transcription	Stomach Mucosa	stomach
10	chr11:73601600-73630000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:73602000-73622800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:73602000-73624000	Weak transcription	Psoas Muscle	Psoas
13	chr11:73602400-73644800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:73604400-73623400	Weak transcription	Fetal Kidney	kidney
15	chr11:73606600-73630000	Weak transcription	A549	lung
16	chr11:73606800-73638200	Weak transcription	NHLF	lung
17	chr11:73607200-73628400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:73610400-73620200	Weak transcription	HMEC	breast
19	chr11:73611000-73628200	Weak transcription	Gastric	stomach
20	chr11:73611200-73628600	Weak transcription	Esophagus	oesophagus
21	chr11:73611600-73620200	Weak transcription	Brain Angular Gyrus	brain
22	chr11:73611600-73620200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:73611600-73620200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:73611600-73620400	Weak transcription	Brain Anterior Caudate	brain
25	chr11:73611600-73621800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:73611600-73622200	Weak transcription	Spleen	Spleen
27	chr11:73611600-73624800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:73611600-73624800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:73611600-73625000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:73611600-73627800	Weak transcription	NHDF-Ad	bronchial
31	chr11:73611600-73628600	Weak transcription	Aorta	Aorta
32	chr11:73611600-73630200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:73611800-73620200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:73611800-73620200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:73611800-73620200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:73611800-73620400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:73611800-73622200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:73611800-73629000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:73612400-73622200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:73613000-73640600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:73613600-73620200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:73613600-73620200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:73613600-73620200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:73613600-73620200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:73613600-73620200	Weak transcription	HepG2	liver
46	chr11:73613600-73620400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:73613600-73620400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:73613600-73620400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:73613600-73620600	Weak transcription	Brain Substantia Nigra	brain
50	chr11:73613600-73621200	Weak transcription	Dnd41	blood

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