Variant report

Variant	rs1670574
Chromosome Location	chr11:73543532-73543533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHCHD8-3	chr11:73543427-73543735	NONHSAT022856

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12293194	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1466218	0.93[AFR][1000 genomes]
rs1531001	0.93[AFR][1000 genomes]
rs1598044	0.86[AFR][1000 genomes]
rs1618529	0.86[AFR][1000 genomes]
rs1621654	1.00[AMR][1000 genomes]
rs1623476	0.93[AFR][1000 genomes]
rs1670538	0.93[AFR][1000 genomes]
rs1670553	0.86[AFR][1000 genomes]
rs1670555	0.98[AFR][1000 genomes]
rs1670560	0.93[AFR][1000 genomes]
rs1670561	0.93[AFR][1000 genomes]
rs1670571	0.93[AFR][1000 genomes]
rs1792157	0.82[AFR][1000 genomes]
rs1792164	0.91[AFR][1000 genomes]
rs1792185	0.93[AFR][1000 genomes]
rs1792186	0.93[AFR][1000 genomes]
rs1792189	0.98[AFR][1000 genomes]
rs1792197	0.93[AFR][1000 genomes]
rs1792202	0.89[AFR][1000 genomes]
rs1976913	1.00[AMR][1000 genomes]
rs2444600	0.81[AFR][1000 genomes]
rs2444602	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2511262	0.93[AFR][1000 genomes]
rs2511273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2511275	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2515090	0.81[AFR][1000 genomes]
rs2515091	0.83[AFR][1000 genomes]
rs2515095	0.89[AFR][1000 genomes]
rs2886812	0.93[AFR][1000 genomes]
rs2924504	0.93[AFR][1000 genomes]
rs3019137	0.93[AFR][1000 genomes]
rs35133035	0.82[AFR][1000 genomes]
rs4551800	1.00[AMR][1000 genomes]
rs594814	1.00[AMR][1000 genomes]
rs599116	1.00[AMR][1000 genomes]
rs601335	1.00[AMR][1000 genomes]
rs610280	1.00[AMR][1000 genomes]
rs620059	1.00[AMR][1000 genomes]
rs627627	0.93[AFR][1000 genomes]
rs627721	1.00[AMR][1000 genomes]
rs641423	1.00[AMR][1000 genomes]
rs651833	0.93[AFR][1000 genomes]
rs652229	1.00[AMR][1000 genomes]
rs7480464	0.93[AFR][1000 genomes]
rs7950472	1.00[AMR][1000 genomes]
rs935989	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9651759	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv11395	chr11:73542220-73544433	Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73499600-73549600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:73499600-73583800	Weak transcription	Aorta	Aorta
3	chr11:73500200-73574200	Weak transcription	Right Ventricle	heart
4	chr11:73500400-73571400	Weak transcription	Fetal Brain Male	brain
5	chr11:73500400-73583800	Weak transcription	Colonic Mucosa	Colon
6	chr11:73500600-73549200	Weak transcription	Osteobl	bone
7	chr11:73500600-73553800	Weak transcription	Fetal Lung	lung
8	chr11:73500800-73558800	Weak transcription	NHEK	skin
9	chr11:73508400-73570600	Weak transcription	Psoas Muscle	Psoas
10	chr11:73508800-73565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:73508800-73573800	Weak transcription	Spleen	Spleen
12	chr11:73508800-73575400	Weak transcription	Gastric	stomach
13	chr11:73509000-73549400	Weak transcription	Brain Substantia Nigra	brain
14	chr11:73509000-73549600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:73509000-73553200	Weak transcription	Lung	lung
16	chr11:73516000-73553200	Weak transcription	HepG2	liver
17	chr11:73517000-73562800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:73517000-73565200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:73517600-73549400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:73518400-73584000	Weak transcription	Pancreas	Pancrea
21	chr11:73522400-73549400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:73522400-73549400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:73525600-73549000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:73529800-73549200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:73530000-73549600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:73530400-73549400	Weak transcription	HSMM	muscle
27	chr11:73530600-73549200	Weak transcription	NH-A	brain
28	chr11:73530600-73549400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:73530600-73549600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr11:73530800-73549200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:73531000-73549200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:73531000-73549600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:73531800-73555600	Weak transcription	Fetal Kidney	kidney
34	chr11:73532000-73549400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:73532600-73546200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:73532800-73548400	Weak transcription	Fetal Heart	heart
37	chr11:73533000-73580400	Weak transcription	Stomach Mucosa	stomach
38	chr11:73534400-73549200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:73534600-73549400	Weak transcription	A549	lung
40	chr11:73535200-73544800	Strong transcription	Dnd41	blood
41	chr11:73535200-73549600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:73535600-73545200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:73535600-73549600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:73535800-73543800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr11:73536200-73547600	Strong transcription	Fetal Stomach	stomach
46	chr11:73536400-73544400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr11:73536400-73545400	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:73536600-73544600	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr11:73536600-73544600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:73536600-73545000	Strong transcription	Fetal Muscle Leg	muscle

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