Variant report

Variant	rs1466218
Chromosome Location	chr11:73589184-73589185
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73497005..73500757-chr11:73586552..73589226,3	MCF-7	breast:
2	chr11:73561146..73563311-chr11:73588199..73589761,2	K562	blood:
3	chr11:73496600..73498927-chr11:73587563..73589388,3	MCF-7	breast:
4	chr11:73101451..73103302-chr11:73587436..73589979,2	MCF-7	breast:
5	chr11:73587462..73590069-chr11:73692817..73694652,2	K562	blood:
6	chr11:73371085..73373574-chr11:73587519..73589689,2	MCF-7	breast:
7	chr11:73470519..73472838-chr11:73586575..73589489,2	MCF-7	breast:
8	chr11:73586195..73589455-chr11:73595184..73599458,5	K562	blood:
9	chr11:73497934..73501442-chr11:73586433..73589232,4	K562	blood:
10	chr11:73497415..73503223-chr11:73585602..73589591,8	K562	blood:
11	chr11:73585766..73589510-chr11:73599101..73602813,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175582	Chromatin interaction
ENSG00000054967	Chromatin interaction
ENSG00000256681	Chromatin interaction
ENSG00000256034	Chromatin interaction
ENSG00000175581	Chromatin interaction
ENSG00000175575	Chromatin interaction
ENSG00000175567	Chromatin interaction
ENSG00000021300	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1531001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1598044	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1618529	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1621654	0.93[YRI][hapmap]
rs1623476	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1670538	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1670553	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1670555	0.91[AFR][1000 genomes]
rs1670560	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670561	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670571	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1670574	0.93[AFR][1000 genomes]
rs1723834	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs1723838	0.93[YRI][hapmap]
rs1723844	0.93[YRI][hapmap]
rs1723845	0.93[YRI][hapmap]
rs1723849	0.93[YRI][hapmap]
rs17244671	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17310409	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1792157	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs1792164	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1792185	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1792186	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1792189	0.91[AFR][1000 genomes]
rs1792194	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1792197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1792202	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1880643	0.93[YRI][hapmap]
rs2444602	0.96[AFR][1000 genomes]
rs2462617	0.83[AFR][1000 genomes]
rs2511262	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2511273	0.82[AFR][1000 genomes]
rs2511275	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2515090	0.82[AFR][1000 genomes]
rs2515091	0.86[AFR][1000 genomes]
rs2515095	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2886812	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2924504	1.00[AFR][1000 genomes]
rs3019137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35133035	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4548648	0.83[AFR][1000 genomes]
rs4944859	0.93[YRI][hapmap]
rs627627	1.00[AFR][1000 genomes]
rs651833	1.00[AFR][1000 genomes]
rs6592529	0.93[YRI][hapmap]
rs7480464	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs935989	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9634024	0.93[YRI][hapmap]
rs9651759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1035977	chr11:73581224-73617653	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73586600-73589600	Active TSS	GM12878-XiMat	blood
2	chr11:73587000-73589200	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:73587000-73589200	Active TSS	K562	blood
4	chr11:73587000-73589400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:73588400-73589200	Flanking Active TSS	Dnd41	blood
6	chr11:73588600-73589400	Enhancers	Primary hematopoietic stem cells	blood
7	chr11:73588600-73589400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr11:73588600-73589400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:73588600-73590000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr11:73588600-73591000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:73588600-73591000	Weak transcription	Esophagus	oesophagus
12	chr11:73588600-73594800	Weak transcription	Ovary	ovary
13	chr11:73588600-73599400	Weak transcription	Left Ventricle	heart
14	chr11:73588600-73610200	Weak transcription	Gastric	stomach
15	chr11:73588600-73610200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:73588600-73611200	Weak transcription	Aorta	Aorta
17	chr11:73588800-73589200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:73588800-73589200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr11:73588800-73589200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:73588800-73589200	Enhancers	Liver	Liver
21	chr11:73588800-73589200	Active TSS	Brain Substantia Nigra	brain
22	chr11:73588800-73589200	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr11:73588800-73589200	Enhancers	NHEK	skin
24	chr11:73588800-73589200	Enhancers	Osteobl	bone
25	chr11:73588800-73589400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:73588800-73589400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr11:73588800-73589400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr11:73588800-73589400	Enhancers	Brain Anterior Caudate	brain
29	chr11:73588800-73589400	Enhancers	Brain Cingulate Gyrus	brain
30	chr11:73588800-73589400	Enhancers	Brain Germinal Matrix	brain
31	chr11:73588800-73589400	Enhancers	Brain Hippocampus Middle	brain
32	chr11:73588800-73589400	Flanking Active TSS	HepG2	liver
33	chr11:73588800-73589600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:73588800-73589600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:73588800-73589600	Weak transcription	Fetal Intestine Small	intestine
36	chr11:73588800-73589600	Enhancers	Fetal Kidney	kidney
37	chr11:73588800-73589800	Weak transcription	Stomach Mucosa	stomach
38	chr11:73588800-73590000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:73588800-73590000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr11:73588800-73590000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:73588800-73590000	Enhancers	Fetal Intestine Large	intestine
42	chr11:73588800-73590800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:73588800-73590800	Weak transcription	Fetal Stomach	stomach
44	chr11:73588800-73590800	Weak transcription	Pancreas	Pancrea
45	chr11:73588800-73591000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:73588800-73594400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:73588800-73594400	Weak transcription	Fetal Brain Female	brain
48	chr11:73588800-73594600	Weak transcription	Placenta	Placenta
49	chr11:73588800-73594800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:73588800-73594800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links