Variant report

Variant	rs1670553
Chromosome Location	chr11:73624806-73624807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73618940..73621720-chr11:73623819..73626215,2	MCF-7	breast:
2	chr11:73616949..73618962-chr11:73623554..73626249,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1466218	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1531001	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1598044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1618529	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1621654	0.93[YRI][hapmap]
rs1623476	0.93[AFR][1000 genomes]
rs1670538	0.89[AFR][1000 genomes]
rs1670555	0.84[AFR][1000 genomes]
rs1670560	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1670561	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1670571	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1670574	0.86[AFR][1000 genomes]
rs1723834	0.93[YRI][hapmap]
rs1723838	0.93[YRI][hapmap]
rs1723844	0.93[YRI][hapmap]
rs1723845	0.93[YRI][hapmap]
rs1723849	0.93[YRI][hapmap]
rs1792157	0.93[YRI][hapmap]
rs1792164	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1792185	0.89[AFR][1000 genomes]
rs1792186	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1792189	0.84[AFR][1000 genomes]
rs1792197	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1792202	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2444602	0.89[AFR][1000 genomes]
rs2511262	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2511275	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2515095	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2886812	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2924504	0.93[AFR][1000 genomes]
rs3019137	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35133035	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs625098	0.85[CEU][hapmap]
rs627627	0.93[AFR][1000 genomes]
rs651833	0.93[AFR][1000 genomes]
rs7480464	0.89[AFR][1000 genomes]
rs935989	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9634024	0.93[YRI][hapmap]
rs9651759	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73588800-73625200	Weak transcription	Small Intestine	intestine
2	chr11:73588800-73630000	Weak transcription	Colonic Mucosa	Colon
3	chr11:73588800-73630200	Weak transcription	HUVEC	blood vessel
4	chr11:73589000-73630200	Weak transcription	Fetal Brain Male	brain
5	chr11:73589400-73629200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:73596000-73640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:73601000-73640400	Weak transcription	Stomach Mucosa	stomach
8	chr11:73601600-73630000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:73602400-73644800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:73606600-73630000	Weak transcription	A549	lung
11	chr11:73606800-73638200	Weak transcription	NHLF	lung
12	chr11:73607200-73628400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:73611000-73628200	Weak transcription	Gastric	stomach
14	chr11:73611200-73628600	Weak transcription	Esophagus	oesophagus
15	chr11:73611600-73625000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:73611600-73627800	Weak transcription	NHDF-Ad	bronchial
17	chr11:73611600-73628600	Weak transcription	Aorta	Aorta
18	chr11:73611600-73630200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:73611800-73629000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:73613000-73640600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:73613600-73625000	Weak transcription	NHEK	skin
22	chr11:73614400-73630000	Weak transcription	Hela-S3	cervix
23	chr11:73615400-73640800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:73615800-73625000	Strong transcription	Liver	Liver
25	chr11:73615800-73633400	Strong transcription	Primary T cells from cord blood	blood
26	chr11:73615800-73633600	Strong transcription	Fetal Muscle Leg	muscle
27	chr11:73615800-73641400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:73616000-73633400	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:73617000-73625000	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:73617600-73646000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:73618000-73628200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:73618000-73646400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:73618200-73627000	Strong transcription	Fetal Stomach	stomach
34	chr11:73618400-73641600	Strong transcription	Placenta	Placenta
35	chr11:73618800-73625000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:73618800-73629600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:73618800-73629800	Weak transcription	Fetal Heart	heart
38	chr11:73618800-73630000	Weak transcription	Pancreas	Pancrea
39	chr11:73618800-73635200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:73618800-73638800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:73619200-73627000	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:73619200-73636800	Strong transcription	Fetal Thymus	thymus
43	chr11:73619600-73633200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:73619600-73639800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr11:73620000-73627000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr11:73620200-73625600	Strong transcription	Rectal Smooth Muscle	rectum
47	chr11:73620200-73625600	Strong transcription	Right Ventricle	heart
48	chr11:73620200-73625800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr11:73620200-73625800	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:73620200-73626400	Strong transcription	Duodenum Smooth Muscle	Duodenum

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