Variant report

Variant	rs625098
Chromosome Location	chr11:73668666-73668667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73666743..73668860-chr11:73692044..73694244,3	K562	blood:
2	chr11:73666457..73671520-chr11:73672404..73676950,7	K562	blood:
3	chr11:73660834..73662428-chr11:73666510..73669209,2	MCF-7	breast:
4	chr11:73666457..73670493-chr11:73673251..73675540,6	K562	blood:
5	chr11:73666483..73669471-chr16:88828358..88831254,2	MCF-7	breast:
6	chr11:73667291..73669436-chr11:73669915..73671843,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187726	Chromatin interaction
ENSG00000175567	Chromatin interaction
ENSG00000255847	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1618529	0.85[CEU][hapmap]
rs1670553	0.85[CEU][hapmap]
rs1792202	0.82[CEU][hapmap]
rs2515095	0.85[CEU][hapmap]
rs2632725	0.85[CEU][hapmap]
rs2924504	0.81[EUR][1000 genomes]
rs627627	0.81[EUR][1000 genomes]
rs628901	0.81[EUR][1000 genomes]
rs651833	0.81[EUR][1000 genomes]
rs674304	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs825871	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:73663400-73670400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:73667000-73668800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:73667200-73669000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:73667400-73668800	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:73667400-73669800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:73667400-73672000	Weak transcription	HSMMtube	muscle
8	chr11:73667600-73669000	Weak transcription	K562	blood
9	chr11:73667600-73672200	Weak transcription	HSMM	muscle
10	chr11:73668000-73668800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:73668000-73669200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr11:73668000-73670000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr11:73668200-73668800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:73668200-73669000	Bivalent Enhancer	Fetal Intestine Small	intestine
15	chr11:73668200-73669800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:73668400-73669000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:73668400-73669000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:73668400-73669200	Enhancers	Primary B cells from cord blood	blood
19	chr11:73668400-73669200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr11:73668600-73668800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:73668600-73668800	Enhancers	Spleen	Spleen
22	chr11:73668600-73668800	Enhancers	Osteobl	bone
23	chr11:73668600-73669000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr11:73668600-73669000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:73668600-73669200	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links