Variant report

Variant	rs628901
Chromosome Location	chr11:73663774-73663775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1618529	0.81[EUR][1000 genomes]
rs1792194	0.91[AFR][1000 genomes]
rs2924504	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs625098	0.81[EUR][1000 genomes]
rs627627	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs651833	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs674304	0.92[EUR][1000 genomes]
rs825871	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
3	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73650200-73666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:73650200-73667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:73660600-73667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:73662000-73663800	Enhancers	HSMM	muscle
8	chr11:73662000-73664000	Enhancers	HSMMtube	muscle
9	chr11:73662400-73667000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:73662400-73667000	Weak transcription	NH-A	brain
11	chr11:73662400-73668200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:73663000-73664000	Bivalent/Poised TSS	HepG2	liver
13	chr11:73663200-73667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:73663400-73670400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:73663600-73663800	Flanking Active TSS	Fetal Kidney	kidney
16	chr11:73663600-73667000	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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