Variant report

Variant	rs674304
Chromosome Location	chr11:73655924-73655925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2924504	0.92[EUR][1000 genomes]
rs625098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs627627	0.92[EUR][1000 genomes]
rs628901	0.92[EUR][1000 genomes]
rs651833	0.92[EUR][1000 genomes]
rs825871	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv3441543	chr11:73650332-73658331	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:73640400-73659200	Weak transcription	HepG2	liver
3	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
4	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:73642600-73656200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:73650200-73666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:73650200-73667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:73652600-73657200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:73652600-73657800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:73655000-73657000	Enhancers	Brain Hippocampus Middle	brain
11	chr11:73655200-73657600	Enhancers	Brain Anterior Caudate	brain
12	chr11:73655400-73656000	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:73655600-73656000	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr11:73655600-73656800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:73655600-73657200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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