Variant report

Variant	rs1792185
Chromosome Location	chr11:73541944-73541945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1466218	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531001	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1598044	0.89[AFR][1000 genomes]
rs1618529	0.89[AFR][1000 genomes]
rs1623476	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1670538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670553	0.89[AFR][1000 genomes]
rs1670555	0.91[AFR][1000 genomes]
rs1670560	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1670561	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1670571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670574	0.93[AFR][1000 genomes]
rs17244671	0.91[EUR][1000 genomes]
rs17310409	0.93[EUR][1000 genomes]
rs1792157	0.89[AFR][1000 genomes]
rs1792164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1792186	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1792189	0.91[AFR][1000 genomes]
rs1792194	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1792197	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1792202	0.93[AFR][1000 genomes]
rs2444602	0.93[AFR][1000 genomes]
rs2511262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2511269	0.83[AFR][1000 genomes]
rs2511273	0.82[AFR][1000 genomes]
rs2511275	0.89[AFR][1000 genomes]
rs2515091	0.90[AFR][1000 genomes]
rs2515095	0.93[AFR][1000 genomes]
rs2886812	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2924504	0.96[AFR][1000 genomes]
rs3019137	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35133035	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs627627	0.96[AFR][1000 genomes]
rs651833	0.96[AFR][1000 genomes]
rs7480464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs935989	0.86[AFR][1000 genomes]
rs9651759	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73499600-73549600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:73499600-73583800	Weak transcription	Aorta	Aorta
3	chr11:73500200-73574200	Weak transcription	Right Ventricle	heart
4	chr11:73500400-73542200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:73500400-73571400	Weak transcription	Fetal Brain Male	brain
6	chr11:73500400-73583800	Weak transcription	Colonic Mucosa	Colon
7	chr11:73500600-73549200	Weak transcription	Osteobl	bone
8	chr11:73500600-73553800	Weak transcription	Fetal Lung	lung
9	chr11:73500800-73558800	Weak transcription	NHEK	skin
10	chr11:73508400-73570600	Weak transcription	Psoas Muscle	Psoas
11	chr11:73508800-73565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:73508800-73573800	Weak transcription	Spleen	Spleen
13	chr11:73508800-73575400	Weak transcription	Gastric	stomach
14	chr11:73509000-73549400	Weak transcription	Brain Substantia Nigra	brain
15	chr11:73509000-73549600	Weak transcription	Brain Angular Gyrus	brain
16	chr11:73509000-73553200	Weak transcription	Lung	lung
17	chr11:73516000-73553200	Weak transcription	HepG2	liver
18	chr11:73517000-73562800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:73517000-73565200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:73517600-73549400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:73518400-73584000	Weak transcription	Pancreas	Pancrea
22	chr11:73522400-73549400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:73522400-73549400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:73525600-73549000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:73529800-73549200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:73530000-73549600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:73530200-73542000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:73530400-73549400	Weak transcription	HSMM	muscle
29	chr11:73530600-73549200	Weak transcription	NH-A	brain
30	chr11:73530600-73549400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:73530600-73549600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr11:73530800-73549200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:73531000-73549200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:73531000-73549600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:73531800-73555600	Weak transcription	Fetal Kidney	kidney
36	chr11:73532000-73549400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:73532600-73546200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:73532800-73548400	Weak transcription	Fetal Heart	heart
39	chr11:73533000-73580400	Weak transcription	Stomach Mucosa	stomach
40	chr11:73534400-73549200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:73534600-73549400	Weak transcription	A549	lung
42	chr11:73534800-73542600	Strong transcription	Fetal Intestine Large	intestine
43	chr11:73535000-73542000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:73535000-73542200	Weak transcription	HMEC	breast
45	chr11:73535200-73544800	Strong transcription	Dnd41	blood
46	chr11:73535200-73549600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:73535600-73545200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:73535600-73549600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:73535800-73543800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:73536200-73547600	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links