Variant report

Variant	nsv975970
Chromosome Location	chr11:93920948-93922138
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR83-5	chr11:93921615-93922163	NONHSAT023708

Extended variants
information (count: 68 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:68 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528861344	chr11:93920978-93920979	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs547427055	chr11:93921006-93921007	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs76741050	chr11:93921008-93921009	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs571817862	chr11:93921042-93921043	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs560697413	chr11:93921123-93921124	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs34284578	chr11:93921131-93921132	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs140338636	chr11:93921182-93921183	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs61905105	chr11:93921204-93921205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs76673860	chr11:93921231-93921232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs537277482	chr11:93921240-93921241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35157672	chr11:93921263-93921264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs555995173	chr11:93921265-93921266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs144198634	chr11:93921268-93921269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs540983377	chr11:93921280-93921281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs112271487	chr11:93921344-93921345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs577661463	chr11:93921350-93921351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs77436504	chr11:93921360-93921361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs58386110	chr11:93921361-93921362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs78759840	chr11:93921370-93921371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs549598431	chr11:93921400-93921401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs545475341	chr11:93921401-93921402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs115655065	chr11:93921420-93921421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113282255	chr11:93921433-93921434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs531510575	chr11:93921438-93921439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370410128	chr11:93921456-93921457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs142412983	chr11:93921481-93921482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561924778	chr11:93921520-93921521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs61497670	chr11:93921531-93921532	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs372615214	chr11:93921533-93921534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs547762139	chr11:93921534-93921535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565673208	chr11:93921548-93921549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs532825932	chr11:93921558-93921559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs551436093	chr11:93921563-93921564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs569675408	chr11:93921572-93921573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs182682573	chr11:93921595-93921596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs555549316	chr11:93921605-93921606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs533579859	chr11:93921609-93921610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs7927338	chr11:93921611-93921612	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs553292699	chr11:93921619-93921620	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs373355103	chr11:93921635-93921636	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs368958759	chr11:93921651-93921652	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs187582424	chr11:93921654-93921655	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs545100427	chr11:93921670-93921671	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs557399016	chr11:93921719-93921720	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs151293305	chr11:93921730-93921731	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs7927496	chr11:93921742-93921743	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs552364158	chr11:93921757-93921758	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs561863196	chr11:93921806-93921807	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs1792624	chr11:93921810-93921811	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs117672645	chr11:93921839-93921840	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Mental retardation	21062444	CNVD
Cancer	21499728	CNVD
Breast cancer	19181860	CNVD
Breast cancer	17603634	CNVD
Mantle cell lymphoma	19029149	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	18852474	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93901400-93921200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:93912200-93921000	Weak transcription	Brain Anterior Caudate	brain
3	chr11:93913600-93929400	Weak transcription	Gastric	stomach
4	chr11:93913800-93921400	Weak transcription	Fetal Brain Male	brain
5	chr11:93914800-93921000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:93914800-93921600	Weak transcription	Thymus	Thymus
7	chr11:93914800-93926200	Weak transcription	Esophagus	oesophagus
8	chr11:93914800-93926200	Weak transcription	Spleen	Spleen
9	chr11:93915000-93921000	Weak transcription	Right Ventricle	heart
10	chr11:93915600-93929400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:93916200-93921200	Weak transcription	Primary T cells from cord blood	blood
12	chr11:93916400-93922000	Weak transcription	Brain Germinal Matrix	brain
13	chr11:93916800-93926200	Weak transcription	HMEC	breast
14	chr11:93917200-93926200	Weak transcription	NHEK	skin
15	chr11:93917400-93921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:93917400-93921200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:93917400-93922000	Weak transcription	Lung	lung
18	chr11:93917600-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:93917600-93925600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:93917600-93934200	Weak transcription	Fetal Intestine Small	intestine
21	chr11:93917800-93926400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:93918000-93925600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:93918600-93921200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:93919200-93921000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:93919200-93921600	Weak transcription	Fetal Stomach	stomach
26	chr11:93919200-93922200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:93919200-93925800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:93919400-93921000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:93919400-93921200	Weak transcription	Left Ventricle	heart
30	chr11:93919400-93925400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:93919400-93925600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:93919400-93925600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:93919400-93926000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:93919400-93926200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:93919600-93926400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:93920000-93922000	Weak transcription	Fetal Intestine Large	intestine
37	chr11:93920000-93925800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:93920000-93926600	Weak transcription	Fetal Brain Female	brain
39	chr11:93920200-93921800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:93920200-93925600	Weak transcription	NHLF	lung
41	chr11:93920200-93928000	Weak transcription	HSMMtube	muscle
42	chr11:93920400-93924400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:93920400-93925600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:93920400-93925600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:93920400-93925600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:93920400-93925600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:93920400-93925600	Weak transcription	NHDF-Ad	bronchial
48	chr11:93920400-93926000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:93920400-93926200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:93920400-93929400	Weak transcription	Pancreas	Pancrea

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