Variant report

Variant	rs549598431
Chromosome Location	chr11:93921400-93921401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1038294	chr11:93918837-93982605	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv975970	chr11:93920948-93922138	Weak transcription Enhancers Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93913600-93929400	Weak transcription	Gastric	stomach
2	chr11:93913800-93921400	Weak transcription	Fetal Brain Male	brain
3	chr11:93914800-93921600	Weak transcription	Thymus	Thymus
4	chr11:93914800-93926200	Weak transcription	Esophagus	oesophagus
5	chr11:93914800-93926200	Weak transcription	Spleen	Spleen
6	chr11:93915600-93929400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:93916400-93922000	Weak transcription	Brain Germinal Matrix	brain
8	chr11:93916800-93926200	Weak transcription	HMEC	breast
9	chr11:93917200-93926200	Weak transcription	NHEK	skin
10	chr11:93917400-93922000	Weak transcription	Lung	lung
11	chr11:93917600-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:93917600-93925600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:93917600-93934200	Weak transcription	Fetal Intestine Small	intestine
14	chr11:93917800-93926400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:93918000-93925600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:93919200-93921600	Weak transcription	Fetal Stomach	stomach
17	chr11:93919200-93922200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:93919200-93925800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:93919400-93925400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:93919400-93925600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:93919400-93925600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:93919400-93926000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:93919400-93926200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:93919600-93926400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:93920000-93922000	Weak transcription	Fetal Intestine Large	intestine
26	chr11:93920000-93925800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:93920000-93926600	Weak transcription	Fetal Brain Female	brain
28	chr11:93920200-93921800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:93920200-93925600	Weak transcription	NHLF	lung
30	chr11:93920200-93928000	Weak transcription	HSMMtube	muscle
31	chr11:93920400-93924400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:93920400-93925600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:93920400-93925600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:93920400-93925600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:93920400-93925600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:93920400-93925600	Weak transcription	NHDF-Ad	bronchial
37	chr11:93920400-93926000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:93920400-93926200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:93920400-93929400	Weak transcription	Pancreas	Pancrea
40	chr11:93920400-93933000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:93920400-93937800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:93920600-93925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:93920600-93926600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:93920600-93927800	Weak transcription	Aorta	Aorta
45	chr11:93921200-93926000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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