Variant report

Variant	nsv976459
Chromosome Location	chr11:64183936-64208134
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:84)
CpG islands
(count:306)
Chromatin interactive
region (count:52)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:84 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr11:64196660-64197020	GM12878	blood:	n/a	n/a
2	CBX3	chr11:64187903-64188228	K562	blood:	n/a	n/a
3	CEBPB	chr11:64201945-64201964	K562	blood:	n/a	n/a
4	CEBPB	chr11:64206047-64206307	HepG2	liver:	n/a	chr11:64206173-64206186 chr11:64206173-64206184 chr11:64206173-64206186 chr11:64206174-64206185
5	CHD2	chr11:64185815-64185965	K562	blood:	n/a	n/a
6	CTCF	chr11:64198920-64199070	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr11:64206480-64206630	Caco-2	colon:	n/a	n/a
8	CTCF	chr11:64188869-64188911	GM10248	blood:	n/a	n/a
9	CTCF	chr11:64204820-64204970	HMEC	breast:	n/a	chr11:64204940-64204953 chr11:64204934-64204947
10	CTCF	chr11:64198983-64199071	K562	blood:	n/a	n/a
11	CTCF	chr11:64192220-64192370	GM12865	blood:	n/a	n/a
12	CTCF	chr11:64206640-64206790	Caco-2	colon:	n/a	n/a
13	CTCF	chr11:64206660-64206810	Caco-2	colon:	n/a	n/a
14	CTCF	chr11:64187680-64187830	A549	lung:	n/a	n/a
15	CTCF	chr11:64198920-64199070	GM06990	blood:	n/a	n/a
16	E2F4	chr11:64190073-64190127	MCF10A-Er-Src	breast:	n/a	n/a
17	EBF1	chr11:64187568-64187825	GM12878	blood:	n/a	chr11:64187757-64187768 chr11:64187702-64187713
18	EBF1	chr11:64187595-64187907	GM12878	blood:	n/a	chr11:64187757-64187768 chr11:64187702-64187713
19	ELF1	chr11:64183580-64183942	GM12878	blood:	n/a	n/a
20	EP300	chr11:64206527-64207171	T-47D	breast:	n/a	chr11:64206989-64207002
21	ESR1	chr11:64206417-64207102	T-47D	breast:	n/a	chr11:64206440-64206457 chr11:64206678-64206695
22	ESR1	chr11:64206335-64207079	T-47D	breast:	n/a	chr11:64206440-64206457 chr11:64206678-64206695
23	ESR1	chr11:64206408-64207070	T-47D	breast:	n/a	chr11:64206440-64206457 chr11:64206678-64206695
24	ESR1	chr11:64206430-64207042	T-47D	breast:	n/a	chr11:64206440-64206457 chr11:64206678-64206695
25	ESR1	chr11:64206556-64206783	ECC-1	luminal epithelium:	n/a	chr11:64206678-64206695
26	ESR1	chr11:64206431-64206881	T-47D	breast:	n/a	chr11:64206440-64206457 chr11:64206678-64206695
27	ESR1	chr11:64206402-64207114	T-47D	breast:	n/a	chr11:64206440-64206457 chr11:64206678-64206695
28	ESR1	chr11:64206570-64206776	ECC-1	luminal epithelium:	n/a	chr11:64206678-64206695
29	FOS	chr11:64203646-64203849	MCF10A-Er-Src	breast:	n/a	chr11:64203767-64203775 chr11:64203765-64203777 chr11:64203766-64203776 chr11:64203768-64203775 chr11:64203767-64203776
30	FOS	chr11:64203739-64203918	MCF10A-Er-Src	breast:	n/a	chr11:64203767-64203775 chr11:64203765-64203777 chr11:64203766-64203776 chr11:64203768-64203775 chr11:64203767-64203776
31	FOS	chr11:64187713-64187839	MCF10A-Er-Src	breast:	n/a	n/a
32	FOS	chr11:64188757-64189063	MCF10A-Er-Src	breast:	n/a	n/a
33	FOS	chr11:64203705-64203907	MCF10A-Er-Src	breast:	n/a	chr11:64203767-64203775 chr11:64203765-64203777 chr11:64203766-64203776 chr11:64203768-64203775 chr11:64203767-64203776
34	FOS	chr11:64203621-64203913	MCF10A-Er-Src	breast:	n/a	chr11:64203767-64203775 chr11:64203765-64203777 chr11:64203766-64203776 chr11:64203768-64203775 chr11:64203767-64203776
35	FOXA1	chr11:64206790-64207037	T-47D	breast:	n/a	n/a
36	GATA3	chr11:64206726-64207045	T-47D	breast:	n/a	chr11:64206805-64206815
37	GTF2F1	chr11:64204208-64204209	H1-hESC	embryonic stem cell:	n/a	n/a
38	JUN	chr11:64183930-64184130	HepG2	liver:	n/a	chr11:64184002-64184015 chr11:64184003-64184012
39	JUN	chr11:64207726-64207902	H1-hESC	embryonic stem cell:	n/a	n/a
40	JUN	chr11:64187576-64187912	HepG2	liver:	n/a	chr11:64187742-64187755 chr11:64187856-64187864
41	JUND	chr11:64203690-64203828	HepG2	liver:	n/a	chr11:64203767-64203775 chr11:64203765-64203777 chr11:64203766-64203776 chr11:64203768-64203775 chr11:64203765-64203776 chr11:64203767-64203776
42	JUND	chr11:64187567-64187935	HepG2	liver:	n/a	chr11:64187856-64187864
43	JUND	chr11:64188759-64189026	HepG2	liver:	n/a	chr11:64188896-64188907
44	JUND	chr11:64206779-64206961	H1-hESC	embryonic stem cell:	n/a	n/a
45	JUND	chr11:64183870-64184028	H1-hESC	embryonic stem cell:	n/a	chr11:64183971-64183982 chr11:64184003-64184012
46	JUND	chr11:64183856-64184164	HepG2	liver:	n/a	chr11:64183971-64183982 chr11:64184003-64184012
47	KAP1	chr11:64187461-64188137	U2OS	brain:	n/a	n/a
48	MAX	chr11:64198839-64199147	K562	blood:	n/a	n/a
49	MAX	chr11:64183321-64183950	K562	blood:	n/a	chr11:64183795-64183805
50	MAZ	chr11:64206888-64206908	HepG2	liver:	n/a	n/a

(count:306 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64186601-64186651	SK-N-SH_RA	brain:	n/a
2	chr11:64186601-64186651	SK-N-SH_RA	brain:	n/a
3	chr11:64187747-64187797	HEK293	kidney:	embryo
4	chr11:64198213-64198263	SK-N-SH_RA	brain:	n/a
5	chr11:64198292-64198342	HCT-116	colon:	n/a
6	chr11:64186719-64186769	NHBE	bronchial:	n/a
7	chr11:64198213-64198263	GM12891	blood:	n/a
8	chr11:64198292-64198342	NH-A	brain:	n/a
9	chr11:64186719-64186769	SK-N-SH_RA	brain:	n/a
10	chr11:64198213-64198263	NB4	blood:	n/a
11	chr11:64198292-64198342	A549	lung:	n/a
12	chr11:64186601-64186651	ECC-1	luminal epithelium:	n/a
13	chr11:64186719-64186769	PrEC	prostate:	n/a
14	chr11:64187747-64187797	HCF	heart:	n/a
15	chr11:64187747-64187797	AG10803	skin:	n/a
16	chr11:64186601-64186651	AG04449	skin:	fetal
17	chr11:64198213-64198263	RPTEC	kidney:	n/a
18	chr11:64186601-64186651	GM06990	blood:	n/a
19	chr11:64198213-64198263	K562	blood:	n/a
20	chr11:64187747-64187797	GM12892	blood:	n/a
21	chr11:64198292-64198342	AG09309	skin:	n/a
22	chr11:64198213-64198263	BE2_C	brain:	n/a
23	chr11:64198292-64198342	SK-N-SH_RA	brain:	n/a
24	chr11:64187747-64187797	Jurkat	blood:	n/a
25	chr11:64186719-64186769	CMK	blood:	n/a
26	chr11:64187747-64187797	CMK	blood:	n/a
27	chr11:64186601-64186651	HCF	heart:	n/a
28	chr11:64187747-64187797	SK-N-SH	brain:	n/a
29	chr11:64198213-64198263	LNCaP	prostate:	n/a
30	chr11:64186719-64186769	ovcar-3	ovarian:	n/a
31	chr11:64187747-64187797	SK-N-MC	brain:	n/a
32	chr11:64187747-64187797	BJ	skin:	n/a
33	chr11:64186601-64186651	HRPEpiC	eye:	n/a
34	chr11:64198292-64198342	GM06990	blood:	n/a
35	chr11:64186601-64186651	AG09319	gingival:	n/a
36	chr11:64198213-64198263	PrEC	prostate:	n/a
37	chr11:64198213-64198263	BJ	skin:	n/a
38	chr11:64186719-64186769	HUVEC	blood vessel:	n/a
39	chr11:64198213-64198263	NHDF-neo	bronchial:	n/a
40	chr11:64198292-64198342	Hepatocyte	liver:	n/a
41	chr11:64187747-64187797	ProgFib	skin:	n/a
42	chr11:64187747-64187797	K562	blood:	n/a
43	chr11:64198292-64198342	LNCaP	prostate:	n/a
44	chr11:64198292-64198342	HIPEpiC	eye:	n/a
45	chr11:64198292-64198342	IMR90	lung:	fetal
46	chr11:64186719-64186769	PANC-1	pancreas:	n/a
47	chr11:64186601-64186651	K562	blood:	n/a
48	chr11:64198213-64198263	GM19239	blood:	n/a
49	chr11:64186601-64186651	HAEpiC	amniotic membrane:	n/a
50	chr11:64198292-64198342	NB4	blood:	n/a

(count:52 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64199979..64202076-chr11:64202502..64205332,2	MCF-7	breast:
2	chr11:64197362..64199430-chr11:64200195..64202972,2	MCF-7	breast:
3	chr11:64198125..64200052-chr11:64263615..64266038,2	K562	blood:
4	chr11:64199979..64202076-chr11:64202502..64205332,2	MCF-7	breast:
5	chr11:64196077..64197933-chr11:64215351..64217656,2	MCF-7	breast:
6	chr11:64207176..64212453-chr11:64214728..64217084,4	MCF-7	breast:
7	11:64197420-64206402..11:64426650-64437729	K562	blood:
8	11:64184313-64187414..11:64519906-64523887	Hela-S3	cervix:
9	chr11:64200342..64202053-chr11:64206735..64208236,2	MCF-7	breast:
10	11:64184313-64187414..11:64489786-64499245	GM12878	blood:
11	11:64184313-64187414..11:64402707-64415880	GM12878	blood:
12	chr11:64186214..64187836-chr11:64216111..64217679,2	K562	blood:
13	chr11:64187682..64189589-chr11:64193182..64195315,2	K562	blood:
14	chr11:64206984..64209864-chr11:64258873..64261595,2	K562	blood:
15	11:64187414-64187725..11:64402707-64415880	Hela-S3	cervix:
16	chr11:64202762..64205386-chr11:64205470..64207937,2	MCF-7	breast:
17	11:64184313-64187414..11:64530985-64535815	GM12878	blood:
18	11:64184313-64187414..11:64501239-64517861	GM12878	blood:
19	chr11:64200040..64202027-chr11:64300129..64302413,2	K562	blood:
20	11:64197420-64206402..11:64523887-64530985	Hela-S3	cervix:
21	11:64184313-64187414..11:64642645-64655002	K562	blood:
22	11:64196069-64197420..11:64501239-64517861	Hela-S3	cervix:
23	11:64184313-64187414..11:64415880-64426617	GM12878	blood:
24	chr11:64201475..64203766-chr11:64205338..64208050,2	K562	blood:
25	chr11:64205773..64209178-chr11:64214928..64217855,3	MCF-7	breast:
26	chr11:64202762..64205386-chr11:64205470..64207937,2	MCF-7	breast:
27	chr11:64206783..64209244-chr11:64213873..64216195,3	K562	blood:
28	11:64184313-64187414..11:64523887-64530985	Hela-S3	cervix:
29	chr11:64200342..64202053-chr11:64206735..64208236,2	MCF-7	breast:
30	11:64184313-64187414..11:64322633-64349180	Hela-S3	cervix:
31	11:64197420-64206402..11:64356433-64395036	K562	blood:
32	chr11:64204056..64205892-chr11:64210023..64212941,2	K562	blood:
33	11:64187725-64189071..11:64402707-64415880	K562	blood:
34	11:64184313-64187414..11:64538326-64543055	GM12878	blood:
35	chr11:64197362..64199430-chr11:64200195..64202972,2	MCF-7	breast:
36	chr11:64111712..64113381-chr11:64202225..64203950,2	MCF-7	breast:
37	chr11:64189227..64191285-chr11:64196358..64198269,2	K562	blood:
38	11:64184313-64187414..11:64517861-64519906	GM12878	blood:
39	11:64197420-64206402..11:64415880-64426617	Hela-S3	cervix:
40	11:64196069-64197420..11:64415880-64426617	Hela-S3	cervix:
41	11:64184313-64187414..11:64356433-64395036	GM12878	blood:
42	chr11:64195038..64195590-chr11:64216879..64217743,2	K562	blood:
43	chr11:64189227..64191285-chr11:64196358..64198269,2	K562	blood:
44	11:64184313-64187414..11:64535815-64538326	K562	blood:
45	chr11:64201475..64203766-chr11:64205338..64208050,2	K562	blood:
46	chr11:64202312..64205347-chr11:64215134..64218077,3	K562	blood:
47	11:64197420-64206402..11:64501239-64517861	GM12878	blood:
48	11:64196069-64197420..11:64402707-64415880	Hela-S3	cervix:
49	11:64184313-64187414..11:64426650-64437729	K562	blood:
50	11:64197420-64206402..11:64402707-64415880	H1-hESC	embryonic stem cell:	embryo

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AP003774.4.1-1	chr11:64195633-64195670	XLOC_009158
2	lnc-AP003774.4.1-1	chr11:64199776-64199840	ENSG00000231492.2
3	lnc-AP003774.4.1-1	chr11:64199776-64199840	XLOC_009158
4	lnc-AP003774.4.1-1	chr11:64188204-64188529	ENSG00000231492.2
5	lnc-AP003774.4.1-1	chr11:64188204-64188528	XLOC_009157
6	lnc-AP003774.4.1-1	chr11:64188203-64188544	NONHSAT021995
7	lnc-TRMT112-3	chr11:64187609-64187687	XLOC_009464
8	lnc-AP003774.4.1-1	chr11:64187863-64188094	XLOC_009157
9	lnc-AP003774.4.1-1	chr11:64187862-64188094	NONHSAT021995
10	lnc-AP003774.4.1-1	chr11:64199932-64200142	XLOC_009158
11	lnc-AP003774.4.1-1	chr11:64195633-64195670	ENSG00000231492.2
12	lnc-AP003774.4.1-1	chr11:64199932-64200142	ENSG00000231492.2
13	lnc-AP003774.4.1-1	chr11:64188007-64188033	ENSG00000231492.2
14	lnc-AP003774.4.1-1	chr11:64187863-64188094	ENSG00000231492.2

No data

Variant related genes	Relation type
ENSG00000231492	TF binding region
ENSG00000231492	CpG island
ENSG00000181908	chromatin interactions
ENSG00000168066	chromatin interactions
ENSG00000231492	chromatin interactions
ENSG00000110047	chromatin interactions
ENSG00000068976	chromatin interactions
ENSG00000230835	chromatin interactions
ENSG00000237410	chromatin interactions
ENSG00000197891	chromatin interactions
ENSG00000168065	chromatin interactions
ENSG00000110076	chromatin interactions
ENSG00000068831	chromatin interactions
TMEM2	miRNA target sites
TMEM20	miRNA target sites

Extended variants
information (count: 888 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:888 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533849655	chr11:64183938-64183939	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs562790853	chr11:64183939-64183940	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs531498573	chr11:64183954-64183955	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs545228806	chr11:64183975-64183976	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs150999153	chr11:64183999-64184000	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs497544	chr11:64184104-64184105	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs546816344	chr11:64184161-64184162	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs560517664	chr11:64184162-64184163	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs112086187	chr11:64184167-64184168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs56700027	chr11:64184170-64184171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529271804	chr11:64184180-64184181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs549232491	chr11:64184267-64184268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs569216925	chr11:64184269-64184270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538002550	chr11:64184275-64184276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs547557374	chr11:64184308-64184309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs570460752	chr11:64184311-64184312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs58287963	chr11:64184358-64184359	Weak transcription	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs571787720	chr11:64184393-64184394	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
19	rs188239539	chr11:64184397-64184398	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
20	rs113556992	chr11:64184416-64184417	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
21	rs574102782	chr11:64184424-64184425	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
22	rs141160144	chr11:64184455-64184456	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
23	rs556134418	chr11:64184558-64184559	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
24	rs374089739	chr11:64184562-64184563	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
25	rs34068194	chr11:64184588-64184589	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
26	rs193176974	chr11:64184597-64184598	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
27	rs146950926	chr11:64184611-64184612	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
28	rs114300239	chr11:64184619-64184620	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
29	rs576208625	chr11:64184672-64184673	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
30	rs75586540	chr11:64184680-64184681	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
31	rs55646341	chr11:64184731-64184732	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
32	rs4963222	chr11:64184735-64184736	Weak transcription	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs397935217	chr11:64184743-64184744	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
34	rs572174985	chr11:64184778-64184779	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
35	rs574727465	chr11:64184783-64184784	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs4963221	chr11:64184786-64184787	Weak transcription	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs560399311	chr11:64184787-64184788	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
38	rs540318612	chr11:64184802-64184803	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
39	rs529211351	chr11:64184833-64184834	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
40	rs560258374	chr11:64184855-64184856	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
41	rs184565697	chr11:64184897-64184898	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
42	rs525826	chr11:64184905-64184906	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
43	rs562588986	chr11:64184910-64184911	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
44	rs189886887	chr11:64184916-64184917	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
45	rs192789204	chr11:64184944-64184945	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
46	rs183774063	chr11:64184955-64184956	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
47	rs188405142	chr11:64184977-64184978	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
48	rs112922207	chr11:64184990-64184991	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
49	rs181888940	chr11:64185046-64185047	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
50	rs547432794	chr11:64185099-64185100	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	21785460	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Prostate cancer	18779856	CNVD
Cancer	17160897	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	20877625	CNVD
Autism	22209245	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD

Chromatin state (count:143 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64178000-64184200	Weak transcription	Right Atrium	heart
2	chr11:64182400-64184000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:64182400-64184000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:64182800-64196000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:64183600-64184000	Enhancers	Gastric	stomach
6	chr11:64183600-64186000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:64183800-64186600	Weak transcription	Placenta	Placenta
8	chr11:64185600-64186200	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:64186000-64186200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:64186600-64187000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:64186600-64188000	Enhancers	Placenta	Placenta
12	chr11:64187400-64187800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:64195600-64196600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:64196200-64196400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:64196200-64196600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:64196200-64196800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:64196400-64196600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:64196400-64197200	Enhancers	Fetal Brain Male	brain
19	chr11:64196400-64197600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:64196800-64197000	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:64196800-64197000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:64196800-64197800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr11:64197000-64198000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:64197200-64198000	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr11:64197200-64201600	Weak transcription	Fetal Brain Male	brain
26	chr11:64197400-64198600	Bivalent Enhancer	Fetal Lung	lung
27	chr11:64197600-64198200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:64197600-64198200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr11:64197800-64198600	Enhancers	Fetal Heart	heart
30	chr11:64197800-64199000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:64198000-64198200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:64198000-64198200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:64198200-64203800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:64201400-64204200	Enhancers	Fetal Brain Female	brain
35	chr11:64201600-64201800	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:64201600-64201800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr11:64201600-64202000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:64201600-64202200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:64201600-64202200	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr11:64201600-64204600	Enhancers	Fetal Brain Male	brain
41	chr11:64201800-64202000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
42	chr11:64201800-64206200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:64202000-64202200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:64202000-64203600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:64202200-64202400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:64202400-64203600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:64202800-64203800	Enhancers	GM12878-XiMat	blood
48	chr11:64203200-64204000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:64203400-64204200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:64203400-64207200	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links