Variant report

Variant	rs497544
Chromosome Location	chr11:64184104-64184105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10128595	0.83[CHB][hapmap]
rs10751010	1.00[MEX][hapmap]
rs10751011	1.00[MEX][hapmap]
rs11821021	0.81[AMR][1000 genomes]
rs11822685	0.81[AMR][1000 genomes]
rs1207462	1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs12294207	1.00[MEX][hapmap]
rs17146119	1.00[MEX][hapmap]
rs17159320	1.00[MEX][hapmap]
rs17159321	1.00[MEX][hapmap]
rs1783519	0.99[ASN][1000 genomes]
rs240690	1.00[MEX][hapmap]
rs470348	1.00[MEX][hapmap]
rs470727	0.81[AMR][1000 genomes]
rs490720	0.91[AMR][1000 genomes]
rs519106	1.00[MEX][hapmap]
rs539008	0.91[AMR][1000 genomes]
rs55690833	0.81[AMR][1000 genomes]
rs558073	1.00[MEX][hapmap]
rs569741	0.91[AMR][1000 genomes]
rs575081	0.91[AMR][1000 genomes]
rs605597	1.00[MEX][hapmap]
rs7123003	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3373822	chr11:64182426-64184924	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv976458	chr11:64183936-64198230	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv976459	chr11:64183936-64208134	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64178000-64184200	Weak transcription	Right Atrium	heart
2	chr11:64182800-64196000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:64183600-64186000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:64183800-64186600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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