Variant report

Variant	nsv977717
Chromosome Location	chr15:56363732-56365887
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TEX9-2	chr15:56363619-56363837	NONHSAT044014
2	lnc-RFX7-2	chr15:56363458-56363839	l_1162_chr15:56293600-56416163_liver

Extended variants
information (count: 163 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:163 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547881919	chr15:56363746-56363747	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs568147235	chr15:56363749-56363750	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs536790760	chr15:56363752-56363753	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs372284704	chr15:56363763-56363764	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs375320832	chr15:56363767-56363768	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs72736446	chr15:56363788-56363789	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs556723144	chr15:56363796-56363797	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs144767671	chr15:56363805-56363806	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs576656753	chr15:56363810-56363811	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs539271767	chr15:56363820-56363821	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs71441425	chr15:56363835-56363836	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs535901216	chr15:56363836-56363837	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs536741430	chr15:56363853-56363854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs57099157	chr15:56363861-56363862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs371991592	chr15:56363876-56363877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs562411362	chr15:56363881-56363882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs576526310	chr15:56364054-56364055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs553196483	chr15:56364068-56364069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs192567609	chr15:56364089-56364090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs541368410	chr15:56364114-56364115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs539396020	chr15:56364129-56364130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561171687	chr15:56364137-56364138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs72736447	chr15:56364157-56364158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs72736448	chr15:56364165-56364166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs8040898	chr15:56364180-56364181	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs368975299	chr15:56364192-56364193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372825973	chr15:56364202-56364203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs116699150	chr15:56364228-56364229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs532723036	chr15:56364231-56364232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558817402	chr15:56364233-56364234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs375717606	chr15:56364247-56364248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs35689962	chr15:56364250-56364251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs556252743	chr15:56364265-56364266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs72736451	chr15:56364266-56364267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs72736452	chr15:56364268-56364269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs552507167	chr15:56364283-56364284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs559951351	chr15:56364303-56364304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs528833278	chr15:56364332-56364333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs548161484	chr15:56364357-56364358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs373231107	chr15:56364373-56364374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs567998453	chr15:56364395-56364396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375120784	chr15:56364411-56364412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs536727734	chr15:56364424-56364425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550233640	chr15:56364440-56364441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570229032	chr15:56364461-56364462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539205884	chr15:56364467-56364468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs369366619	chr15:56364469-56364470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs552894616	chr15:56364490-56364491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs145961784	chr15:56364505-56364506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs535423734	chr15:56364521-56364522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Gastric adenocarcinoma	19115996	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56363600-56383800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr15:56364800-56365200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr15:56364800-56365200	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr15:56364800-56365200	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr15:56365000-56365200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr15:56365200-56365400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:56365400-56365600	Enhancers	Fetal Brain Male	brain
8	chr15:56365600-56366400	Weak transcription	Fetal Brain Male	brain

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