Variant report

Variant	rs8040898
Chromosome Location	chr15:56364180-56364181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57664818	0.83[AMR][1000 genomes]
rs58033458	0.83[AMR][1000 genomes]
rs58074377	0.83[AMR][1000 genomes]
rs60307110	0.83[AMR][1000 genomes]
rs60398723	0.83[AMR][1000 genomes]
rs61176298	0.83[AMR][1000 genomes]
rs7163562	0.83[AMR][1000 genomes]
rs7167598	0.84[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs7171643	0.83[AMR][1000 genomes]
rs73411506	0.83[AMR][1000 genomes]
rs73411535	0.83[AMR][1000 genomes]
rs73411540	0.83[AMR][1000 genomes]
rs73411553	0.83[AMR][1000 genomes]
rs74017499	0.83[AMR][1000 genomes]
rs74018319	0.83[AMR][1000 genomes]
rs8041393	0.83[AMR][1000 genomes]
rs9672464	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv3312198	chr15:56362260-56367158	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv522888	chr15:56362968-56369124	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv3414428	chr15:56363060-56366358	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv3312391	chr15:56363701-56364257	Weak transcription	lncRNA	n/a	inside rSNPs	n/a
8	esv3495817	chr15:56363716-56364335	Weak transcription	lncRNA	n/a	inside rSNPs	n/a
9	nsv977717	chr15:56363732-56365887	Weak transcription ZNF genes & repeats Active TSS Enhancers	lncRNA	n/a	inside rSNPs	n/a
10	esv3312392	chr15:56363765-56364267	Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56363600-56383800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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