Variant report
Variant | rs73411535 |
---|---|
Chromosome Location | chr15:56552521-56552522 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10518847 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs12101968 | 0.83[AMR][1000 genomes] |
rs57664818 | 1.00[AMR][1000 genomes] |
rs58033458 | 1.00[AMR][1000 genomes] |
rs58074377 | 1.00[AMR][1000 genomes] |
rs59808258 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60307110 | 1.00[AMR][1000 genomes] |
rs60398723 | 1.00[AMR][1000 genomes] |
rs61176298 | 1.00[AMR][1000 genomes] |
rs7163562 | 1.00[AMR][1000 genomes] |
rs7167598 | 1.00[AMR][1000 genomes] |
rs7171643 | 1.00[AMR][1000 genomes] |
rs73411506 | 1.00[AMR][1000 genomes] |
rs73411540 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73411553 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73411565 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74017499 | 1.00[AMR][1000 genomes] |
rs74018319 | 1.00[AMR][1000 genomes] |
rs8040898 | 0.83[AMR][1000 genomes] |
rs8041393 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9672464 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv833019 | chr15:56486029-56649933 | Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | nsv569547 | chr15:56504598-56572176 | ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:56548600-56553800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |