Variant report

Variant	rs59808258
Chromosome Location	chr15:56584155-56584156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10518847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12101968	0.83[AMR][1000 genomes]
rs57664818	1.00[AMR][1000 genomes]
rs58033458	1.00[AMR][1000 genomes]
rs58074377	1.00[AMR][1000 genomes]
rs60307110	1.00[AMR][1000 genomes]
rs60398723	1.00[AMR][1000 genomes]
rs61176298	1.00[AMR][1000 genomes]
rs7163562	1.00[AMR][1000 genomes]
rs7167598	1.00[AMR][1000 genomes]
rs7171643	1.00[AMR][1000 genomes]
rs73411506	1.00[AMR][1000 genomes]
rs73411535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411540	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017499	1.00[AMR][1000 genomes]
rs74018319	1.00[AMR][1000 genomes]
rs8041393	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9672464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv977854	chr15:56583544-56599264	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56582000-56584600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:56582400-56584800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:56584000-56585600	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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