Variant report

Variant	rs58033458
Chromosome Location	chr15:56524726-56524727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56523183..56527072-chr15:56528127..56530635,4	K562	blood:
2	chr15:56522241..56525811-chr15:56534847..56539735,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction
ENSG00000181827	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10518847	1.00[AMR][1000 genomes]
rs12101968	0.83[AMR][1000 genomes]
rs57664818	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58074377	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59808258	1.00[AMR][1000 genomes]
rs60307110	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60398723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61176298	1.00[AMR][1000 genomes]
rs61387999	0.92[AFR][1000 genomes]
rs7163562	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7167598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7171643	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409483	0.90[AFR][1000 genomes]
rs73409498	0.98[AFR][1000 genomes]
rs73411506	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411535	1.00[AMR][1000 genomes]
rs73411540	1.00[AMR][1000 genomes]
rs73411553	1.00[AMR][1000 genomes]
rs73411565	1.00[AMR][1000 genomes]
rs74017486	0.84[AFR][1000 genomes]
rs74017499	1.00[AMR][1000 genomes]
rs74018319	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040898	0.83[AMR][1000 genomes]
rs8041393	1.00[AMR][1000 genomes]
rs9672464	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2760380	chr15:56510123-56529955	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56508000-56534400	Weak transcription	Fetal Heart	heart
2	chr15:56509000-56533600	Weak transcription	Osteobl	bone
3	chr15:56510600-56528600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:56513800-56530200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr15:56514000-56535000	Weak transcription	Pancreas	Pancrea
6	chr15:56514600-56532400	Weak transcription	HSMMtube	muscle
7	chr15:56514800-56534800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:56515800-56529200	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:56516200-56525600	Weak transcription	NHDF-Ad	bronchial
10	chr15:56518600-56527400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:56519400-56528400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:56520000-56527200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:56520200-56530200	ZNF genes & repeats	Dnd41	blood
14	chr15:56520400-56525400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr15:56520400-56525800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr15:56520400-56526000	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr15:56520400-56526600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr15:56520400-56526800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:56520400-56527400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr15:56520600-56526400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr15:56520800-56526200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:56520800-56526600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr15:56521000-56526000	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr15:56521000-56526200	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr15:56521200-56525000	ZNF genes & repeats	Fetal Intestine Large	intestine
26	chr15:56521200-56527000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:56521200-56528000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:56521400-56526200	ZNF genes & repeats	Fetal Lung	lung
29	chr15:56521400-56526800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
30	chr15:56521400-56532000	ZNF genes & repeats	GM12878-XiMat	blood
31	chr15:56521600-56525000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
32	chr15:56521600-56526000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
33	chr15:56521800-56526800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
34	chr15:56521800-56527200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:56522000-56525800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
36	chr15:56522000-56526800	ZNF genes & repeats	A549	lung
37	chr15:56522000-56527400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
38	chr15:56522200-56526200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
39	chr15:56522200-56526200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
40	chr15:56522200-56527400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
41	chr15:56522400-56526200	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:56522400-56526600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
43	chr15:56522600-56524800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:56522800-56525600	ZNF genes & repeats	Fetal Thymus	thymus
45	chr15:56522800-56525800	ZNF genes & repeats	Fetal Brain Female	brain
46	chr15:56522800-56526000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:56522800-56526200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
48	chr15:56522800-56533600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr15:56523000-56524800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:56523000-56525600	ZNF genes & repeats	Fetal Stomach	stomach

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