Variant report

Variant	rs58074377
Chromosome Location	chr15:56450741-56450742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56449170..56452087-chr15:56458652..56461237,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10518847	1.00[AMR][1000 genomes]
rs12101968	0.83[AMR][1000 genomes]
rs57664818	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58033458	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59808258	1.00[AMR][1000 genomes]
rs60307110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60398723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60409860	0.84[AFR][1000 genomes]
rs61176298	1.00[AMR][1000 genomes]
rs61387999	0.90[AFR][1000 genomes]
rs7163562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7167598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7169697	0.81[AFR][1000 genomes]
rs7171643	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409483	0.95[AFR][1000 genomes]
rs73409498	0.97[AFR][1000 genomes]
rs73411506	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411535	1.00[AMR][1000 genomes]
rs73411540	1.00[AMR][1000 genomes]
rs73411553	1.00[AMR][1000 genomes]
rs73411565	1.00[AMR][1000 genomes]
rs74017478	0.81[AFR][1000 genomes]
rs74017486	0.82[AFR][1000 genomes]
rs74017499	1.00[AMR][1000 genomes]
rs74018319	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040898	0.83[AMR][1000 genomes]
rs8041393	1.00[AMR][1000 genomes]
rs9672464	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv1811079	chr15:56448125-56462293	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56424800-56453800	Weak transcription	Brain Substantia Nigra	brain
2	chr15:56433800-56464000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:56435200-56458800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:56435400-56461000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:56435400-56462400	Weak transcription	Fetal Thymus	thymus
6	chr15:56435400-56465200	Weak transcription	Thymus	Thymus
7	chr15:56435800-56454000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:56436000-56458000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:56436400-56455800	Weak transcription	Liver	Liver
10	chr15:56436600-56458800	Weak transcription	Primary B cells from cord blood	blood
11	chr15:56441000-56453200	Weak transcription	A549	lung
12	chr15:56441000-56461400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr15:56442000-56457200	Weak transcription	HMEC	breast
14	chr15:56442000-56458000	Weak transcription	HepG2	liver
15	chr15:56442000-56462600	Weak transcription	HSMM	muscle
16	chr15:56442200-56451000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:56442200-56457200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:56442600-56470600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:56442800-56450800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:56442800-56454400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:56442800-56462600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:56443200-56452200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:56443200-56462600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:56446600-56468400	Weak transcription	Fetal Lung	lung
25	chr15:56447600-56451200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:56447600-56457800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr15:56447800-56455800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:56448000-56452200	Weak transcription	Primary T cells from cord blood	blood
29	chr15:56448000-56456400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:56448200-56458000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr15:56448400-56460200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:56448600-56457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:56449400-56458400	Weak transcription	Dnd41	blood
34	chr15:56449600-56453200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:56450000-56451200	Weak transcription	GM12878-XiMat	blood
36	chr15:56450200-56452400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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