Variant report

Variant	rs7171643
Chromosome Location	chr15:56499859-56499860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56498392..56501238-chr15:56507855..56509963,2	K562	blood:
2	chr15:56496910..56499892-chr15:56507573..56509355,2	K562	blood:
3	chr15:56499669..56501343-chr15:56501763..56504338,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10518847	1.00[AMR][1000 genomes]
rs12101968	0.83[AMR][1000 genomes]
rs57664818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58033458	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58074377	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59808258	1.00[AMR][1000 genomes]
rs60307110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60398723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61176298	1.00[AMR][1000 genomes]
rs61387999	0.97[AFR][1000 genomes]
rs7163119	0.80[AFR][1000 genomes]
rs7163562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7167598	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409483	0.95[AFR][1000 genomes]
rs73409498	0.97[AFR][1000 genomes]
rs73411506	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411535	1.00[AMR][1000 genomes]
rs73411540	1.00[AMR][1000 genomes]
rs73411553	1.00[AMR][1000 genomes]
rs73411565	1.00[AMR][1000 genomes]
rs74017478	0.80[AFR][1000 genomes]
rs74017486	0.82[AFR][1000 genomes]
rs74017499	1.00[AMR][1000 genomes]
rs74018319	1.00[AMR][1000 genomes]
rs8040898	0.83[AMR][1000 genomes]
rs8041393	1.00[AMR][1000 genomes]
rs9672464	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv528965	chr15:56489159-56504598	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56453600-56515000	Weak transcription	NHLF	lung
2	chr15:56457400-56500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
4	chr15:56466000-56500000	Weak transcription	Thymus	Thymus
5	chr15:56466000-56514200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:56467000-56500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:56467000-56511600	Weak transcription	Fetal Intestine Small	intestine
8	chr15:56470800-56503800	Weak transcription	Fetal Lung	lung
9	chr15:56477000-56500400	Weak transcription	Liver	Liver
10	chr15:56480000-56500000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr15:56480200-56515400	Weak transcription	Hela-S3	cervix
12	chr15:56482600-56500200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:56484800-56500000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:56485000-56502800	Weak transcription	Gastric	stomach
15	chr15:56485600-56500000	Weak transcription	Aorta	Aorta
16	chr15:56485600-56521200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:56489200-56503600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:56493000-56500000	Weak transcription	Ovary	ovary
19	chr15:56493200-56515400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:56495000-56500000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:56495200-56500000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:56495200-56500000	Weak transcription	Psoas Muscle	Psoas
23	chr15:56495200-56501600	Enhancers	Primary B cells from peripheral blood	blood
24	chr15:56495200-56504400	Weak transcription	Fetal Intestine Large	intestine
25	chr15:56495800-56500400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:56496400-56501200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr15:56496600-56500400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:56496600-56515200	Weak transcription	Left Ventricle	heart
29	chr15:56496800-56500400	Weak transcription	K562	blood
30	chr15:56497000-56502000	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr15:56497000-56502600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:56497000-56502600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr15:56497400-56505000	Weak transcription	HSMMtube	muscle
34	chr15:56497600-56500600	Weak transcription	Brain Substantia Nigra	brain
35	chr15:56497600-56501600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr15:56497800-56500400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr15:56497800-56500400	Weak transcription	HSMM	muscle
38	chr15:56497800-56502400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:56498000-56500400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:56498000-56500400	Weak transcription	Adipose Nuclei	Adipose
41	chr15:56498000-56503800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr15:56498200-56500400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr15:56498200-56508000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr15:56498400-56500000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:56498400-56500000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:56498400-56500000	Weak transcription	HMEC	breast
47	chr15:56498400-56500200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:56498400-56500200	Weak transcription	Osteobl	bone
49	chr15:56498400-56500400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr15:56498400-56500400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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