Variant report

Variant	rs74017486
Chromosome Location	chr15:56482033-56482034
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56775211	1.00[AMR][1000 genomes]
rs57664818	0.82[AFR][1000 genomes]
rs58033458	0.84[AFR][1000 genomes]
rs58074377	0.82[AFR][1000 genomes]
rs60307110	0.84[AFR][1000 genomes]
rs60398723	0.85[AFR][1000 genomes]
rs60409860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61176298	0.87[AFR][1000 genomes]
rs61387999	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7163119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7167598	0.81[AFR][1000 genomes]
rs7169697	0.88[AFR][1000 genomes]
rs7171643	0.82[AFR][1000 genomes]
rs73409498	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411506	0.85[AFR][1000 genomes]
rs74017478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017499	0.84[AFR][1000 genomes]
rs74018319	0.93[AFR][1000 genomes]
rs74018632	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56453600-56515000	Weak transcription	NHLF	lung
2	chr15:56454600-56484000	Weak transcription	Brain Anterior Caudate	brain
3	chr15:56456600-56484800	Weak transcription	Aorta	Aorta
4	chr15:56457400-56500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:56458400-56496200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
7	chr15:56459400-56484400	Weak transcription	Spleen	Spleen
8	chr15:56461400-56482400	Weak transcription	Ovary	ovary
9	chr15:56463600-56496600	Weak transcription	NHEK	skin
10	chr15:56464000-56484000	Weak transcription	Fetal Kidney	kidney
11	chr15:56464600-56497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:56465000-56486200	Weak transcription	Osteobl	bone
13	chr15:56465400-56496600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:56465800-56496000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:56465800-56496600	Weak transcription	HMEC	breast
16	chr15:56466000-56482400	Weak transcription	NH-A	brain
17	chr15:56466000-56484600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:56466000-56497000	Weak transcription	HSMMtube	muscle
19	chr15:56466000-56500000	Weak transcription	Thymus	Thymus
20	chr15:56466000-56514200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:56466200-56483800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:56466200-56494800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:56466400-56495400	Weak transcription	Fetal Stomach	stomach
24	chr15:56466800-56484800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:56466800-56494600	Weak transcription	Fetal Intestine Large	intestine
26	chr15:56467000-56500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:56467000-56511600	Weak transcription	Fetal Intestine Small	intestine
28	chr15:56469000-56484400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:56469600-56491400	Weak transcription	A549	lung
30	chr15:56470200-56482400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:56470200-56498800	Weak transcription	Dnd41	blood
32	chr15:56470800-56496400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:56470800-56503800	Weak transcription	Fetal Lung	lung
34	chr15:56471000-56485200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:56474200-56482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:56474200-56495000	Weak transcription	K562	blood
37	chr15:56476600-56496200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr15:56477000-56495800	Weak transcription	Primary B cells from cord blood	blood
39	chr15:56477000-56500400	Weak transcription	Liver	Liver
40	chr15:56477200-56484000	Weak transcription	Right Ventricle	heart
41	chr15:56477200-56497000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:56477800-56483000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr15:56478600-56482200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr15:56479000-56485000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:56479400-56483000	Enhancers	HepG2	liver
46	chr15:56479800-56496200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:56480000-56482600	Weak transcription	Right Atrium	heart
48	chr15:56480000-56483200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr15:56480000-56484000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr15:56480000-56484000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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