Variant report

Variant	rs61387999
Chromosome Location	chr15:56469181-56469182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56467090..56469731-chr15:56488365..56490022,2	MCF-7	breast:
2	chr15:56468018..56469682-chr15:56471943..56474273,2	K562	blood:
3	chr15:56459962..56461531-chr15:56468857..56470997,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56775211	1.00[AMR][1000 genomes]
rs57664818	0.97[AFR][1000 genomes]
rs58033458	0.92[AFR][1000 genomes]
rs58074377	0.90[AFR][1000 genomes]
rs60307110	0.95[AFR][1000 genomes]
rs60398723	0.93[AFR][1000 genomes]
rs60409860	1.00[AMR][1000 genomes]
rs7163119	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7163562	0.93[AFR][1000 genomes]
rs7167598	0.89[AFR][1000 genomes]
rs7171643	0.97[AFR][1000 genomes]
rs73409483	0.92[AFR][1000 genomes]
rs73409498	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411506	0.93[AFR][1000 genomes]
rs74017478	1.00[AMR][1000 genomes]
rs74017486	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018632	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56442600-56470600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:56453000-56479600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:56453600-56515000	Weak transcription	NHLF	lung
4	chr15:56454400-56470000	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:56454400-56470200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:56454400-56473400	Weak transcription	K562	blood
7	chr15:56454600-56484000	Weak transcription	Brain Anterior Caudate	brain
8	chr15:56456600-56484800	Weak transcription	Aorta	Aorta
9	chr15:56457400-56500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:56457800-56471600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:56458000-56470200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:56458000-56474000	Weak transcription	Pancreas	Pancrea
13	chr15:56458400-56496200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:56459200-56469400	Weak transcription	Psoas Muscle	Psoas
15	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
16	chr15:56459400-56484400	Weak transcription	Spleen	Spleen
17	chr15:56459600-56473200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr15:56460200-56480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:56461000-56470200	Strong transcription	Dnd41	blood
20	chr15:56461000-56470600	Weak transcription	NHDF-Ad	bronchial
21	chr15:56461200-56469200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:56461200-56469400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:56461400-56482400	Weak transcription	Ovary	ovary
24	chr15:56461600-56470600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:56463600-56496600	Weak transcription	NHEK	skin
26	chr15:56464000-56484000	Weak transcription	Fetal Kidney	kidney
27	chr15:56464400-56479600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:56464600-56497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:56464800-56469200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:56465000-56486200	Weak transcription	Osteobl	bone
31	chr15:56465200-56469400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:56465400-56496600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:56465600-56481000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:56465800-56470800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr15:56465800-56473200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:56465800-56496000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:56465800-56496600	Weak transcription	HMEC	breast
38	chr15:56466000-56470800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:56466000-56476600	Weak transcription	Liver	Liver
40	chr15:56466000-56476800	Weak transcription	Primary B cells from cord blood	blood
41	chr15:56466000-56479600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr15:56466000-56482400	Weak transcription	NH-A	brain
43	chr15:56466000-56484600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr15:56466000-56497000	Weak transcription	HSMMtube	muscle
45	chr15:56466000-56500000	Weak transcription	Thymus	Thymus
46	chr15:56466000-56514200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr15:56466200-56469400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr15:56466200-56471600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:56466200-56472600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:56466200-56476800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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