Variant report
| Variant | rs9672464 |
|---|---|
| Chromosome Location | chr15:56547991-56547992 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:56533157..56539020-chr15:56544541..56548879,7 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151575 | Chromatin interaction |
| ENSG00000181827 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10518847 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12101968 | 0.83[AMR][1000 genomes] |
| rs57664818 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58033458 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58074377 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59808258 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60307110 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60398723 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61176298 | 1.00[AMR][1000 genomes] |
| rs7163562 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7167598 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7171643 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73409498 | 0.86[AFR][1000 genomes] |
| rs73411506 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73411535 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73411540 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73411553 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73411565 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74017499 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74018319 | 1.00[AMR][1000 genomes] |
| rs8040898 | 0.83[AMR][1000 genomes] |
| rs8041393 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833019 | chr15:56486029-56649933 | Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv569547 | chr15:56504598-56572176 | ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:56546800-56548000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr15:56547600-56548400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
