Variant report

Variant	nsv977727
Chromosome Location	chr15:62374493-62375202
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:62372730..62374756-chr15:62378857..62380874,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VPS13C-3	chr15:62374649-62375504	NONHSAT044267

Extended variants
information (count: 35 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs151214752	chr15:62374505-62374506	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs10519154	chr15:62374526-62374527	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs529988388	chr15:62374537-62374538	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs140384923	chr15:62374585-62374586	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs1436963	chr15:62374593-62374594	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs569893963	chr15:62374622-62374623	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs186320192	chr15:62374642-62374643	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576991856	chr15:62374682-62374683	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs574249555	chr15:62374699-62374700	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs541366713	chr15:62374705-62374706	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs552960814	chr15:62374719-62374720	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs7402469	chr15:62374729-62374730	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs150357259	chr15:62374739-62374740	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs542175207	chr15:62374743-62374744	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs17271389	chr15:62374877-62374878	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs542772687	chr15:62374878-62374879	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs4775457	chr15:62374915-62374916	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs191610941	chr15:62374936-62374937	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs12438803	chr15:62374942-62374943	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs138032472	chr15:62374974-62374975	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs533184137	chr15:62374977-62374978	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs551446689	chr15:62375017-62375018	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs4775458	chr15:62375036-62375037	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs142476435	chr15:62375068-62375069	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs561384214	chr15:62375069-62375070	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs75005431	chr15:62375070-62375071	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs567775560	chr15:62375096-62375097	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs373947132	chr15:62375111-62375112	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs368246907	chr15:62375123-62375124	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs183613788	chr15:62375141-62375142	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs577688790	chr15:62375168-62375169	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs538670911	chr15:62375184-62375185	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs146468711	chr15:62375185-62375186	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs575270819	chr15:62375186-62375187	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs139035781	chr15:62375194-62375195	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Mental retardation	17124404	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62367800-62379800	Weak transcription	Pancreas	Pancrea
2	chr15:62373200-62379200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:62374000-62376200	Enhancers	Fetal Intestine Small	intestine
4	chr15:62374800-62376200	Enhancers	Fetal Intestine Large	intestine
5	chr15:62375200-62376000	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links