Variant report
Variant | rs10519154 |
---|---|
Chromosome Location | chr15:62374526-62374527 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:62372730..62374756-chr15:62378857..62380874,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10519144 | 0.83[JPT][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes] |
rs12232347 | 0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes] |
rs12439027 | 0.81[ASN][1000 genomes] |
rs12439366 | 0.89[AFR][1000 genomes];0.85[ASN][1000 genomes] |
rs12440611 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12440748 | 0.85[ASN][1000 genomes] |
rs12441358 | 0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes] |
rs12442506 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap] |
rs12442569 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap] |
rs12594396 | 0.81[ASN][1000 genomes] |
rs12595158 | 1.00[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes] |
rs17238189 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes] |
rs17238210 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap] |
rs2113935 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
rs35057371 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs35592904 | 0.84[ASN][1000 genomes] |
rs3784635 | 1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.83[ASN][1000 genomes] |
rs4774426 | 0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
rs4775452 | 0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes] |
rs4775456 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7177538 | 0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes] |
rs72747879 | 0.81[ASN][1000 genomes] |
rs72747895 | 0.81[ASN][1000 genomes] |
rs72747896 | 0.81[ASN][1000 genomes] |
rs72747901 | 0.81[ASN][1000 genomes] |
rs72749703 | 0.81[ASN][1000 genomes] |
rs72749742 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs72749744 | 0.83[ASN][1000 genomes] |
rs72749772 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs8030161 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes] |
rs963023 | 0.81[ASN][1000 genomes] |
rs9635356 | 0.84[ASN][1000 genomes] |
rs9788739 | 0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv457176 | chr15:62178695-62519658 | Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
2 | nsv569643 | chr15:62178695-62519658 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
3 | nsv471247 | chr15:62202481-62519658 | Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
4 | nsv569646 | chr15:62202482-62519658 | Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
5 | nsv1044748 | chr15:62276183-62521856 | Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
6 | nsv542405 | chr15:62276183-62521856 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
7 | nsv457178 | chr15:62340126-62394324 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
8 | nsv569652 | chr15:62340126-62394324 | Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
9 | nsv1560 | chr15:62354264-62399304 | Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
10 | nsv948606 | chr15:62364932-63088916 | Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 46 gene(s) | inside rSNPs | diseases |
11 | nsv977727 | chr15:62374493-62375202 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:62367800-62379800 | Weak transcription | Pancreas | Pancrea |
2 | chr15:62373200-62379200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
3 | chr15:62374000-62376200 | Enhancers | Fetal Intestine Small | intestine |