Variant report

Variant	nsv977743
Chromosome Location	chr15:82572110-82575207
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GOLGA6L9-5	chr15:82573380-82573998	NONHSAT047774

Extended variants
information (count: 41 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551014685	chr15:82573395-82573396	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs555849288	chr15:82573396-82573397	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs571054274	chr15:82573407-82573408	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs145590851	chr15:82573518-82573519	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs547307695	chr15:82573628-82573629	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs200845776	chr15:82573689-82573690	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs567528145	chr15:82573701-82573702	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs3973890	chr15:82573833-82573834	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs556510025	chr15:82573876-82573877	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs397841911	chr15:82573937-82573938	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs188257554	chr15:82573983-82573984	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs566512452	chr15:82573989-82573990	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs145428498	chr15:82574609-82574610	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs147702604	chr15:82574612-82574613	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs199814789	chr15:82574630-82574631	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs550515297	chr15:82574660-82574661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs150691873	chr15:82574661-82574662	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs200316427	chr15:82574675-82574676	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs148875800	chr15:82574699-82574700	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs375269009	chr15:82574719-82574720	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs368164942	chr15:82574729-82574730	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs371282950	chr15:82574732-82574733	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs531481065	chr15:82574734-82574735	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs139892263	chr15:82574770-82574771	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs147011075	chr15:82574773-82574774	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs149395104	chr15:82574799-82574800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs571638240	chr15:82574821-82574822	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs369179306	chr15:82574828-82574829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs148049557	chr15:82574838-82574839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs534001702	chr15:82574847-82574848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs140891092	chr15:82574862-82574863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs554248036	chr15:82574867-82574868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs11630197	chr15:82574879-82574880	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs138516072	chr15:82574890-82574891	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs556428710	chr15:82574913-82574914	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs575653572	chr15:82574923-82574924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs576359951	chr15:82574925-82574926	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs200327311	chr15:82574929-82574930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs141564954	chr15:82574947-82574948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs146209921	chr15:82574970-82574971	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs138008248	chr15:82574991-82574992	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Congenital diaphragmatic hernia	20921022	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
renal disease	17924346	CNVD
Breast cancer	20409316	CNVD
Mental retardation	17847001	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82574600-82575000	Enhancers	GM12878-XiMat	blood

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