Variant report
Variant | rs11630197 |
---|---|
Chromosome Location | chr15:82574879-82574880 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11073036 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
rs11631813 | 0.91[ASW][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs11633000 | 0.83[ASN][1000 genomes] |
rs11639440 | 0.80[CHB][hapmap];0.94[JPT][hapmap] |
rs11854289 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs11854483 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs12324875 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes] |
rs1501367 | 0.87[CHB][hapmap];0.94[JPT][hapmap] |
rs1566561 | 0.93[ASN][1000 genomes] |
rs16973457 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs1948741 | 0.90[ASN][1000 genomes] |
rs1948742 | 0.93[CHB][hapmap];0.88[ASN][1000 genomes] |
rs1972460 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
rs2016372 | 0.94[ASN][1000 genomes] |
rs2047679 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
rs2134046 | 0.86[CHB][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes] |
rs2457497 | 0.91[ASW][hapmap];0.93[CHB][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap] |
rs2665103 | 0.93[CHB][hapmap];0.94[JPT][hapmap] |
rs28454949 | 0.84[ASN][1000 genomes] |
rs28522807 | 0.87[ASN][1000 genomes] |
rs3759800 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
rs3858953 | 0.85[ASN][1000 genomes] |
rs3902959 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
rs4238534 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4267268 | 0.92[ASN][1000 genomes] |
rs4296215 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs4778674 | 0.89[ASN][1000 genomes] |
rs4778986 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes] |
rs4778987 | 0.82[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes] |
rs4778990 | 0.89[ASN][1000 genomes] |
rs56398167 | 0.90[ASN][1000 genomes] |
rs61554133 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7167504 | 0.91[ASN][1000 genomes] |
rs7176926 | 0.81[ASN][1000 genomes] |
rs72749540 | 0.89[ASN][1000 genomes] |
rs72749557 | 0.90[ASN][1000 genomes] |
rs72749560 | 0.90[ASN][1000 genomes] |
rs72749561 | 0.90[ASN][1000 genomes] |
rs72749564 | 0.92[ASN][1000 genomes] |
rs72749575 | 0.87[ASN][1000 genomes] |
rs72749586 | 0.94[ASN][1000 genomes] |
rs7403041 | 0.89[ASN][1000 genomes] |
rs7403244 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs8025964 | 0.87[ASN][1000 genomes] |
rs8027301 | 0.91[ASW][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes] |
rs8027661 | 0.91[ASW][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes] |
rs8030210 | 0.90[ASN][1000 genomes] |
rs8030250 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
rs8032633 | 0.90[ASN][1000 genomes] |
rs8033313 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes] |
rs905450 | 0.91[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.92[MEX][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes] |
rs9972440 | 0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv570245 | chr15:82456227-82591082 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | nsv1041040 | chr15:82465124-82606410 | Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | esv1801737 | chr15:82468455-82589044 | Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv570246 | chr15:82485707-82581264 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
5 | nsv1041506 | chr15:82496164-82581427 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | esv1798145 | chr15:82506790-82581264 | Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
7 | nsv904440 | chr15:82524544-82591082 | Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
8 | nsv904441 | chr15:82532963-82580736 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
9 | nsv1054025 | chr15:82540486-83058214 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
10 | nsv977743 | chr15:82572110-82575207 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs11630197 | RP13-996F3.5 | cis | Esophagus Mucosa | GTEx |
rs11630197 | FAM154B | cis | parietal | SCAN |
rs11630197 | LOC653344 | cis | multi-tissue | Pritchard |
rs11630197 | BTBD1 | cis | cerebellum | SCAN |
rs11630197 | RASGRF1 | cis | cerebellum | SCAN |
rs11630197 | FLJ40113///LOC161527///LOC440295///LOC642346 | N/A | lymphoblastoid | RTeQTL |
rs11630197 | LOC402057 | trans | multi-tissue | Pritchard |
rs11630197 | RP11-152F13.8 | cis | Esophagus Mucosa | GTEx |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:82574600-82575000 | Enhancers | GM12878-XiMat | blood |