Variant report

Variant	rs8033313
Chromosome Location	chr15:82532247-82532248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11073036	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11630197	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs11631813	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs11633000	0.83[ASN][1000 genomes]
rs11639440	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs11854289	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11854483	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12324875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1501367	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1566559	0.83[ASN][1000 genomes]
rs1566560	0.83[ASN][1000 genomes]
rs1566561	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16973457	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1846908	0.83[ASN][1000 genomes]
rs1948741	0.89[CEU][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1948742	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs1972460	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2016372	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2047679	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2134046	0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs2457497	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs2665103	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs28454949	0.84[ASN][1000 genomes]
rs28522807	0.87[ASN][1000 genomes]
rs3759800	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3858953	0.90[ASN][1000 genomes]
rs3902959	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4238534	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs4267268	0.96[ASN][1000 genomes]
rs4296215	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs4778674	0.84[ASN][1000 genomes]
rs4778986	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4778987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4778990	0.84[ASN][1000 genomes]
rs56398167	0.94[ASN][1000 genomes]
rs61554133	0.98[ASN][1000 genomes]
rs7167504	0.95[ASN][1000 genomes]
rs7176926	0.85[ASN][1000 genomes]
rs72749540	0.94[ASN][1000 genomes]
rs72749557	0.95[ASN][1000 genomes]
rs72749560	0.95[ASN][1000 genomes]
rs72749561	0.95[ASN][1000 genomes]
rs72749564	0.96[ASN][1000 genomes]
rs72749575	0.92[ASN][1000 genomes]
rs72749586	0.99[ASN][1000 genomes]
rs7403041	0.84[ASN][1000 genomes]
rs7403244	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs8025964	0.92[ASN][1000 genomes]
rs8027301	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs8027661	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs8030210	0.94[ASN][1000 genomes]
rs8030250	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs8032633	0.94[ASN][1000 genomes]
rs905450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9972440	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv457213	chr15:82456227-82573255	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv570244	chr15:82456227-82573255	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1041040	chr15:82465124-82606410	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv1801737	chr15:82468455-82589044	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv570246	chr15:82485707-82581264	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1041506	chr15:82496164-82581427	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv1798145	chr15:82506790-82581264	Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv904440	chr15:82524544-82591082	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:82481800-82553000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:82497000-82553600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:82497600-82536000	Weak transcription	Fetal Heart	heart
5	chr15:82499000-82550800	Weak transcription	HUVEC	blood vessel
6	chr15:82499400-82553000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:82501800-82544600	Weak transcription	Brain Angular Gyrus	brain
8	chr15:82503000-82542200	Weak transcription	Stomach Mucosa	stomach
9	chr15:82503200-82552800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:82503600-82553000	Weak transcription	Small Intestine	intestine
11	chr15:82503800-82553200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:82504200-82553200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:82507400-82553000	Weak transcription	NH-A	brain
14	chr15:82508200-82553800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:82510600-82532600	Weak transcription	Ovary	ovary
16	chr15:82510800-82554200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:82511800-82534800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:82511800-82554200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:82512600-82539600	Weak transcription	Spleen	Spleen
20	chr15:82515800-82553600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:82519800-82532600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:82520000-82553000	Weak transcription	Gastric	stomach
23	chr15:82520000-82553000	Weak transcription	Right Ventricle	heart
24	chr15:82520000-82553400	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:82520000-82554200	Weak transcription	Pancreas	Pancrea
26	chr15:82520200-82533000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr15:82520200-82553000	Weak transcription	Psoas Muscle	Psoas
28	chr15:82520200-82554400	Weak transcription	Esophagus	oesophagus
29	chr15:82523000-82550000	Weak transcription	Brain Anterior Caudate	brain
30	chr15:82523600-82553400	Weak transcription	Fetal Kidney	kidney
31	chr15:82524000-82545400	Weak transcription	Fetal Intestine Small	intestine
32	chr15:82524800-82552600	Weak transcription	K562	blood
33	chr15:82527800-82534400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr15:82528600-82532400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:82528600-82533400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:82528600-82534000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:82528800-82533400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:82528800-82533800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:82529200-82533800	Strong transcription	Thymus	Thymus
40	chr15:82529600-82533000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:82529600-82533400	Strong transcription	Adipose Nuclei	Adipose
42	chr15:82529600-82533800	Strong transcription	Fetal Thymus	thymus
43	chr15:82529600-82534400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:82529600-82534400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:82529600-82534400	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr15:82529800-82533400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:82529800-82533400	Strong transcription	Fetal Muscle Leg	muscle
48	chr15:82529800-82533800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:82529800-82533800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:82530000-82533800	Strong transcription	Liver	Liver

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