Variant report

Variant	nsv977845
Chromosome Location	chr15:82398263-82412461
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:82337307..82338833-chr15:82401935..82404513,2	MCF-7	breast:
2	chr15:82403068..82405226-chr15:82430485..82432551,2	K562	blood:
3	chr15:82401295..82402881-chr15:82407665..82409375,2	K562	blood:
4	chr15:82400569..82401498-chr15:82490090..82491041,4	K562	blood:
5	chr15:82400510..82401451-chr15:82489931..82491014,9	MCF-7	breast:
6	chr15:82400583..82401510-chr15:82431758..82433239,16	MCF-7	breast:
7	chr15:82396164..82398346-chr15:82406284..82408349,2	K562	blood:
8	chr15:82401295..82402881-chr15:82407665..82409375,2	K562	blood:
9	chr15:82405061..82407968-chr15:82415699..82418455,2	K562	blood:
10	chr15:82394736..82396289-chr15:82399463..82401078,2	MCF-7	breast:
11	chr15:82390762..82392949-chr15:82398564..82402214,3	K562	blood:
12	chr15:81772882..81773555-chr15:82397557..82398455,2	K562	blood:
13	chr15:82396164..82398346-chr15:82406284..82408349,2	K562	blood:
14	chr15:82400526..82401456-chr15:82490044..82491282,10	MCF-7	breast:
15	chr15:82400531..82401257-chr15:82431919..82432522,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000183496	chromatin interactions

Extended variants
information (count: 603 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:603 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115070746	chr15:82398308-82398309	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs562700418	chr15:82398323-82398324	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs552155038	chr15:82398355-82398356	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs531433772	chr15:82398384-82398385	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs551636407	chr15:82398439-82398440	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs557686117	chr15:82398440-82398441	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs571466366	chr15:82398452-82398453	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs533329674	chr15:82398511-82398512	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs546590688	chr15:82398517-82398518	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs572951089	chr15:82398546-82398547	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs35280832	chr15:82398550-82398551	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs527996438	chr15:82398551-82398552	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs148779834	chr15:82398570-82398571	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs142393238	chr15:82398595-82398596	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs549109905	chr15:82398609-82398610	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs569420722	chr15:82398658-82398659	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs538074595	chr15:82398688-82398689	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs182884878	chr15:82398696-82398697	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs578191069	chr15:82398708-82398709	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs373478420	chr15:82398720-82398721	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs373270191	chr15:82398736-82398737	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs151181957	chr15:82398737-82398738	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs553795024	chr15:82398775-82398776	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs28584021	chr15:82398789-82398790	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs542722856	chr15:82398824-82398825	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs562478206	chr15:82398842-82398843	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs576151447	chr15:82398849-82398850	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs113158401	chr15:82398851-82398852	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs187513321	chr15:82398874-82398875	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs565138027	chr15:82398875-82398876	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs371310884	chr15:82398880-82398881	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs374220280	chr15:82398882-82398883	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs192132774	chr15:82398887-82398888	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs547325859	chr15:82398907-82398908	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs183653462	chr15:82398931-82398932	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs60087229	chr15:82398938-82398939	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs549034183	chr15:82398941-82398942	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs569275665	chr15:82398961-82398962	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs538390939	chr15:82398962-82398963	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs572642745	chr15:82398980-82398981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs551693105	chr15:82398984-82398985	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs77812200	chr15:82399008-82399009	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs375279583	chr15:82399014-82399015	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs34813190	chr15:82399030-82399031	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs571851947	chr15:82399050-82399051	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs143989919	chr15:82399084-82399085	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs554534391	chr15:82399124-82399125	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs146414460	chr15:82399157-82399158	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs141128820	chr15:82399173-82399174	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs564575452	chr15:82399175-82399176	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Congenital diaphragmatic hernia	20921022	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
renal disease	17924346	CNVD
Breast cancer	20409316	CNVD
Mental retardation	17847001	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21509527	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:164 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82393400-82399200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:82393400-82399200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:82393600-82404000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:82396400-82406000	Weak transcription	Right Atrium	heart
5	chr15:82396600-82399200	Weak transcription	K562	blood
6	chr15:82397000-82398400	Enhancers	HSMMtube	muscle
7	chr15:82397200-82401600	Enhancers	HSMM	muscle
8	chr15:82397400-82399600	Enhancers	Placenta	Placenta
9	chr15:82397600-82398800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:82397600-82399400	Enhancers	HMEC	breast
11	chr15:82397600-82399600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:82397600-82399600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:82397800-82398600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:82397800-82398600	Enhancers	NHEK	skin
15	chr15:82397800-82398800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:82397800-82399400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:82397800-82399400	Enhancers	NH-A	brain
18	chr15:82397800-82399600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:82398000-82398600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:82398000-82398600	Enhancers	NHDF-Ad	bronchial
21	chr15:82398200-82398600	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr15:82398200-82399200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:82398200-82399200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:82398200-82401000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:82398200-82401200	Weak transcription	A549	lung
26	chr15:82398200-82404000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:82398200-82414200	Weak transcription	NHLF	lung
28	chr15:82398400-82398800	Weak transcription	HSMMtube	muscle
29	chr15:82398600-82399000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:82398600-82403800	Weak transcription	NHDF-Ad	bronchial
31	chr15:82398800-82399600	Enhancers	HSMMtube	muscle
32	chr15:82399000-82399600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:82399200-82399400	Enhancers	K562	blood
35	chr15:82399200-82399600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:82399200-82399600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:82399200-82399600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:82399400-82413400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:82399400-82413400	Weak transcription	HMEC	breast
40	chr15:82399600-82400800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:82399600-82400800	Weak transcription	HSMMtube	muscle
42	chr15:82399600-82403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:82399600-82413400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:82399600-82413600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr15:82400800-82401200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:82400800-82403000	Enhancers	K562	blood
47	chr15:82401000-82401200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:82401000-82401400	Enhancers	Liver	Liver
49	chr15:82401200-82401400	Enhancers	A549	lung
50	chr15:82401600-82405600	Weak transcription	HSMM	muscle

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