Variant report

Variant	rs571466366
Chromosome Location	chr15:82398452-82398453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:81772882..81773555-chr15:82397557..82398455,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv570242	chr15:82370616-82409727	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv528511	chr15:82391287-82404705	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv16537	chr15:82396887-82401477	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv977845	chr15:82398263-82412461	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82393400-82399200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:82393400-82399200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:82393600-82404000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:82396400-82406000	Weak transcription	Right Atrium	heart
5	chr15:82396600-82399200	Weak transcription	K562	blood
6	chr15:82397200-82401600	Enhancers	HSMM	muscle
7	chr15:82397400-82399600	Enhancers	Placenta	Placenta
8	chr15:82397600-82398800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:82397600-82399400	Enhancers	HMEC	breast
10	chr15:82397600-82399600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr15:82397600-82399600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:82397800-82398600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:82397800-82398600	Enhancers	NHEK	skin
14	chr15:82397800-82398800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:82397800-82399400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:82397800-82399400	Enhancers	NH-A	brain
17	chr15:82397800-82399600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:82398000-82398600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:82398000-82398600	Enhancers	NHDF-Ad	bronchial
20	chr15:82398200-82398600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr15:82398200-82399200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:82398200-82399200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:82398200-82401000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:82398200-82401200	Weak transcription	A549	lung
25	chr15:82398200-82404000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:82398200-82414200	Weak transcription	NHLF	lung
27	chr15:82398400-82398800	Weak transcription	HSMMtube	muscle

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