Variant report

Variant	nsv977860
Chromosome Location	chr15:33906185-33910781
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33904850..33906861-chr15:33932211..33933758,2	MCF-7	breast:

Extended variants
information (count: 197 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:197 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114139434	chr15:33906342-33906343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs186701066	chr15:33906389-33906390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs554448988	chr15:33906430-33906431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs190687906	chr15:33906438-33906439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs61121099	chr15:33906445-33906446	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs558393541	chr15:33906467-33906468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs576739921	chr15:33906486-33906487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138181633	chr15:33906513-33906514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs181065696	chr15:33906524-33906525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs143662165	chr15:33906545-33906546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571675441	chr15:33906576-33906577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs542202086	chr15:33906582-33906583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs16973282	chr15:33906600-33906601	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs368350071	chr15:33906618-33906619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs560246501	chr15:33906656-33906657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs572168453	chr15:33906733-33906734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs16973289	chr15:33906770-33906771	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs1472305	chr15:33906771-33906772	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs374034993	chr15:33906777-33906778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs367551252	chr15:33906814-33906815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs576283797	chr15:33906839-33906840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs11858539	chr15:33906842-33906843	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs118102721	chr15:33906926-33906927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs147183279	chr15:33906945-33906946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs59940186	chr15:33906992-33906993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs560962431	chr15:33907035-33907036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs35770231	chr15:33907044-33907045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs11637847	chr15:33907051-33907052	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs539661629	chr15:33907054-33907055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs115306149	chr15:33907137-33907138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs570241655	chr15:33907138-33907139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs16973302	chr15:33907152-33907153	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs532655581	chr15:33907187-33907188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs149258695	chr15:33907192-33907193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs541508326	chr15:33907193-33907194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs574098181	chr15:33907223-33907224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs2339313	chr15:33907233-33907234	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs553797509	chr15:33907236-33907237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530149196	chr15:33907264-33907265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs115552179	chr15:33907270-33907271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs372305432	chr15:33907279-33907280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs576648174	chr15:33907340-33907341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs543944881	chr15:33907352-33907353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs562019068	chr15:33907353-33907354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs529329402	chr15:33907459-33907460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs4780134	chr15:33907500-33907501	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs559830599	chr15:33907531-33907532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs533549108	chr15:33907552-33907553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570296504	chr15:33907565-33907566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs76453469	chr15:33907606-33907607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prader-willi syndrome	21504564	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33873000-33923400	Weak transcription	Brain Anterior Caudate	brain
4	chr15:33891800-33921800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:33893800-33911800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:33895600-33922800	Weak transcription	Aorta	Aorta
7	chr15:33897600-33915800	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:33897600-33919600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:33905400-33908600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:33905600-33915200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:33908600-33909000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
12	chr15:33908600-33909200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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