Variant report

Variant	rs11858539
Chromosome Location	chr15:33906842-33906843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16973185	0.90[AMR][1000 genomes]
rs58822275	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61121099	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv431382	chr15:33873751-33915088	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753712	chr15:33894495-33914004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv456788	chr15:33900705-33909822	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1483	chr15:33904964-33916254	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv977860	chr15:33906185-33910781	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3311698	chr15:33906351-33910890	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3311699	chr15:33906351-33910890	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv827289	chr15:33906396-33910799	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv442369	chr15:33906465-33908970	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv498843	chr15:33906532-33910717	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv514777	chr15:33906600-33910544	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33873000-33923400	Weak transcription	Brain Anterior Caudate	brain
4	chr15:33891800-33921800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:33893800-33911800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:33895600-33922800	Weak transcription	Aorta	Aorta
7	chr15:33897600-33915800	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:33897600-33919600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:33905400-33908600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:33905600-33915200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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