Variant report

Variant	nsv980063
Chromosome Location	chr3:84717031-84720500
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:84716502..84719314-chr3:84721003..84723364,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VGLL3-6	chr3:84715551-84719007	ENSG00000242641.1
2	lnc-VGLL3-6	chr3:84715551-84719007	NONHSAT090649

Extended variants
information (count: 87 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs151311444	chr3:84717044-84717045	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs548228304	chr3:84717083-84717084	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs73845533	chr3:84717119-84717120	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs188898083	chr3:84717136-84717137	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs558976695	chr3:84717146-84717147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs193083350	chr3:84717151-84717152	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs9809891	chr3:84717158-84717159	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs538371376	chr3:84717198-84717199	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs140195159	chr3:84717200-84717201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs372773374	chr3:84717209-84717210	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs183035966	chr3:84717259-84717260	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs114633370	chr3:84717286-84717287	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs201417800	chr3:84717290-84717291	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs554169383	chr3:84717371-84717372	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs112827614	chr3:84717376-84717377	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs546093542	chr3:84717424-84717425	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs561461076	chr3:84717505-84717506	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs532054661	chr3:84717513-84717514	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs186579851	chr3:84717537-84717538	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs199503806	chr3:84717549-84717550	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs529650833	chr3:84717576-84717577	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs191825855	chr3:84717613-84717614	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs566669405	chr3:84717631-84717632	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs183853240	chr3:84717653-84717654	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs552066825	chr3:84717725-84717726	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs149912603	chr3:84717821-84717822	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs369458150	chr3:84717864-84717865	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs71831569	chr3:84717872-84717873	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs371365410	chr3:84717876-84717877	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs538336175	chr3:84717882-84717883	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs536338041	chr3:84717915-84717916	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs144885450	chr3:84717938-84717939	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs576649473	chr3:84717964-84717965	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs9834714	chr3:84717981-84717982	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs565354331	chr3:84717985-84717986	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs568421310	chr3:84718019-84718020	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs535500011	chr3:84718084-84718085	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs140765728	chr3:84718126-84718127	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs9835018	chr3:84718146-84718147	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs564637454	chr3:84718169-84718170	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs557926040	chr3:84718177-84718178	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs370408158	chr3:84718182-84718183	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs543862621	chr3:84718183-84718184	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs578192104	chr3:84718184-84718185	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs562265429	chr3:84718187-84718188	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs574061344	chr3:84718267-84718268	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs373125926	chr3:84718308-84718309	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs541446285	chr3:84718322-84718323	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs79171792	chr3:84718382-84718383	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs189019901	chr3:84718422-84718423	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
Medulloblastoma	16783165	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Schizophrenia	23813976	CNVD
Lung squamous cell carcinoma	22363434	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84720200-84722000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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