Variant report
| Variant | rs73845533 |
|---|---|
| Chromosome Location | chr3:84717119-84717120 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:84716502..84719314-chr3:84721003..84723364,2 | K562 | blood: |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-VGLL3-6 | chr3:84715551-84719007 | ENSG00000242641.1 |
| 2 | lnc-VGLL3-6 | chr3:84715551-84719007 | NONHSAT090649 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11918517 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11918582 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11922786 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4053335 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55667737 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58142945 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59512381 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73845535 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73845542 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760745 | chr3:84208364-84783259 | Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv998578 | chr3:84521514-84773582 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv536615 | chr3:84521514-84773582 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv460745 | chr3:84644186-84779079 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv590851 | chr3:84644186-84779079 | Enhancers Flanking Active TSS Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv1014928 | chr3:84653836-84773582 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 7 | nsv536616 | chr3:84653836-84773582 | Active TSS Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 8 | nsv590852 | chr3:84679083-84727898 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 9 | esv3381298 | chr3:84689266-85030314 | Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 10 | nsv980063 | chr3:84717031-84720500 | Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
