Variant report

Variant	nsv980398
Chromosome Location	chr4:15909547-15927288
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:15734659..15735211-chr4:15926706..15927206,2	MCF-7	breast:
2	chr4:15919905..15922253-chr4:15932751..15934628,2	MCF-7	breast:
3	chr4:15875073..15877510-chr4:15912443..15913986,2	K562	blood:
4	chr4:15884741..15886965-chr4:15906601..15909552,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD38-4	chr4:15921122-15923370	NONHSAT095650
2	lnc-CD38-4	chr4:15923379-15924281	NONHSAT095650
3	lnc-CD38-4	chr4:15920182-15920551	NONHSAT095650

No data

Extended variants
information (count: 792 )
Associated
traits (count: 49 )

Variant overlapped rSNPs/rCNVs (count:792 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs189934442	chr4:15909548-15909549	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs148668489	chr4:15909585-15909586	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs562341019	chr4:15909631-15909632	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs13103381	chr4:15909690-15909691	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs182561887	chr4:15909696-15909697	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs570762457	chr4:15909750-15909751	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs539795599	chr4:15909785-15909786	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs142100157	chr4:15909867-15909868	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs377318493	chr4:15909878-15909879	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs572783685	chr4:15909912-15909913	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs567198052	chr4:15909925-15909926	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs536149842	chr4:15909953-15909954	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs58072071	chr4:15909964-15909965	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs575866288	chr4:15910014-15910015	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs56219219	chr4:15910047-15910048	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs557805087	chr4:15910104-15910105	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs555654595	chr4:15910109-15910110	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs73801527	chr4:15910115-15910116	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs151170393	chr4:15910127-15910128	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs575499969	chr4:15910134-15910135	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs139026304	chr4:15910174-15910175	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs542506264	chr4:15910179-15910180	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs111763797	chr4:15910186-15910187	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs562355403	chr4:15910194-15910195	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs188142435	chr4:15910207-15910208	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs550820121	chr4:15910227-15910228	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs73801528	chr4:15910232-15910233	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs533244507	chr4:15910236-15910237	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs144013202	chr4:15910281-15910282	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs566860767	chr4:15910316-15910317	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs536164342	chr4:15910338-15910339	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs2098056	chr4:15910363-15910364	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs192710368	chr4:15910379-15910380	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs2532070	chr4:15910385-15910386	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs386672055	chr4:15910398-15910399	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs116281961	chr4:15910407-15910408	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs13435483	chr4:15910432-15910433	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs577696327	chr4:15910453-15910454	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs533647155	chr4:15910458-15910459	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs139361846	chr4:15910463-15910464	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs184469934	chr4:15910466-15910467	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs573263643	chr4:15910469-15910470	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs188987661	chr4:15910492-15910493	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs116766100	chr4:15910498-15910499	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs369649696	chr4:15910505-15910506	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs192564532	chr4:15910514-15910515	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs545213648	chr4:15910542-15910543	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs184424467	chr4:15910547-15910548	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs2079681	chr4:15910553-15910554	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs2079680	chr4:15910587-15910588	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:49)

Disease	PMID	Source
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Breast cancer	17133270	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21829676	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:203 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15908000-15909600	Enhancers	Fetal Stomach	stomach
2	chr4:15908200-15911800	Weak transcription	Esophagus	oesophagus
3	chr4:15908200-15913800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:15908400-15912600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:15908400-15913800	Weak transcription	Placenta	Placenta
6	chr4:15908600-15909600	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:15908600-15914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:15908800-15909600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:15909000-15909600	Weak transcription	NHEK	skin
10	chr4:15909000-15909800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:15909000-15912000	Weak transcription	Hela-S3	cervix
12	chr4:15909000-15913600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:15909200-15909600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:15909600-15909800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:15909600-15911200	ZNF genes & repeats	NHEK	skin
16	chr4:15909600-15914200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:15909800-15910600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:15909800-15911600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:15910600-15911600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:15911200-15911600	Weak transcription	NHEK	skin
21	chr4:15911400-15911600	Enhancers	Stomach Smooth Muscle	stomach
22	chr4:15911600-15912200	Enhancers	NHEK	skin
23	chr4:15911600-15912400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr4:15911600-15912600	Enhancers	HMEC	breast
25	chr4:15911600-15920200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:15911600-15924000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:15911800-15912600	Enhancers	Esophagus	oesophagus
28	chr4:15912000-15912600	Enhancers	Hela-S3	cervix
29	chr4:15912200-15912600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:15912200-15912600	Weak transcription	NHEK	skin
31	chr4:15912400-15913800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:15912600-15913600	Weak transcription	HMEC	breast
33	chr4:15912600-15913800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:15912600-15913800	Weak transcription	Esophagus	oesophagus
35	chr4:15912600-15914400	Weak transcription	Hela-S3	cervix
36	chr4:15912600-15916200	Enhancers	NHEK	skin
37	chr4:15913600-15915600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:15913600-15924400	Enhancers	HMEC	breast
39	chr4:15913800-15914000	Enhancers	Esophagus	oesophagus
40	chr4:15913800-15914800	Enhancers	Fetal Stomach	stomach
41	chr4:15913800-15915000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:15913800-15915000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:15913800-15915000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr4:15913800-15915200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:15913800-15915200	Enhancers	Placenta	Placenta
46	chr4:15913800-15915400	Enhancers	Placenta Amnion	Placenta Amnion
47	chr4:15913800-15915800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:15913800-15915800	Enhancers	NH-A	brain
49	chr4:15914000-15914400	Weak transcription	Esophagus	oesophagus
50	chr4:15914000-15915400	Enhancers	Stomach Mucosa	stomach

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