Variant report

Variant	rs13435483
Chromosome Location	chr4:15910432-15910433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10003162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929849	1.00[AMR][1000 genomes]
rs28641762	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116489	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73118467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv980398	chr4:15909547-15927288	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15908200-15911800	Weak transcription	Esophagus	oesophagus
2	chr4:15908200-15913800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:15908400-15912600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:15908400-15913800	Weak transcription	Placenta	Placenta
5	chr4:15908600-15914200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:15909000-15912000	Weak transcription	Hela-S3	cervix
7	chr4:15909000-15913600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:15909600-15911200	ZNF genes & repeats	NHEK	skin
9	chr4:15909600-15914200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:15909800-15910600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:15909800-15911600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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