Variant report

Variant	rs73116489
Chromosome Location	chr4:15903186-15903187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10003162	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929849	1.00[AMR][1000 genomes]
rs13435483	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28641762	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73118467	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15899600-15906800	Weak transcription	A549	lung
2	chr4:15900400-15903600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:15901800-15905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:15902200-15905200	Weak transcription	NHEK	skin
5	chr4:15902600-15904000	Enhancers	Primary B cells from cord blood	blood
6	chr4:15902600-15907600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:15902800-15905400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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