Variant report

Variant	rs28641762
Chromosome Location	chr4:15897562-15897563
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10003162	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929849	1.00[AMR][1000 genomes]
rs13435483	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116489	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73118467	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15893400-15898600	Enhancers	HMEC	breast
2	chr4:15894200-15897800	Enhancers	Hela-S3	cervix
3	chr4:15894400-15898600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:15894600-15897600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:15894600-15899200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:15895200-15897800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:15895200-15897800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:15895400-15900400	Weak transcription	Esophagus	oesophagus
9	chr4:15895600-15897600	Enhancers	NHDF-Ad	bronchial
10	chr4:15895800-15897800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:15895800-15898400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:15896400-15900600	Weak transcription	Stomach Mucosa	stomach
13	chr4:15896400-15902200	Enhancers	NHEK	skin
14	chr4:15896600-15898400	Enhancers	Fetal Brain Male	brain
15	chr4:15897200-15897600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr4:15897400-15897600	Flanking Active TSS	A549	lung
17	chr4:15897400-15900000	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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