Variant report

Variant	nsv981299
Chromosome Location	chr6:14990645-14997807
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14996389..14999164-chr6:15016282..15017980,2	K562	blood:
2	chr6:14988507..14990361-chr6:14990397..14992385,2	K562	blood:
3	chr6:14987677..14990288-chr6:14994527..14997197,2	MCF-7	breast:
4	chr6:14989019..14991902-chr6:15089508..15091769,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-5	chr6:14997647-14997706	XLOC_005618
2	lnc-DTNBP1-5	chr6:14997647-14997706	NONHSAT107859

Variant related genes	Relation type
ENSG00000234261	chromatin interactions
FAM199X	miRNA target sites

Extended variants
information (count: 273 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:273 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201206252	chr6:14990652-14990653	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs112962256	chr6:14990655-14990656	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs397762668	chr6:14990666-14990667	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs62395205	chr6:14990668-14990669	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs534164726	chr6:14990689-14990690	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs368364080	chr6:14990697-14990698	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs544085444	chr6:14990698-14990699	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs553867269	chr6:14990702-14990703	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs191132436	chr6:14990721-14990722	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs555772050	chr6:14990756-14990757	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs536741133	chr6:14990784-14990785	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs200315157	chr6:14990800-14990801	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs374517661	chr6:14990822-14990823	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs113644656	chr6:14990880-14990881	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs183049869	chr6:14990905-14990906	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs140223213	chr6:14990912-14990913	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs79286345	chr6:14990967-14990968	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs78591718	chr6:14991035-14991036	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs187292990	chr6:14991073-14991074	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs542369242	chr6:14991074-14991075	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs201678245	chr6:14991147-14991148	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs375834602	chr6:14991169-14991170	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs572634213	chr6:14991209-14991210	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs541048030	chr6:14991259-14991260	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs2661089	chr6:14991293-14991294	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs557833199	chr6:14991294-14991295	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs528138680	chr6:14991330-14991331	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs563143863	chr6:14991336-14991337	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs532304255	chr6:14991414-14991415	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs115811823	chr6:14991430-14991431	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs34517107	chr6:14991451-14991452	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs192637953	chr6:14991489-14991490	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs534594476	chr6:14991503-14991504	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs184759195	chr6:14991525-14991526	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs567655970	chr6:14991531-14991532	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs376220314	chr6:14991550-14991551	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs556648683	chr6:14991572-14991573	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs377018860	chr6:14991578-14991579	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs564874480	chr6:14991595-14991596	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs28676409	chr6:14991633-14991634	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs533501264	chr6:14991637-14991638	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs576733491	chr6:14991639-14991640	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs35100007	chr6:14991756-14991757	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs539254630	chr6:14991778-14991779	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs76367974	chr6:14991779-14991780	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs560740469	chr6:14991801-14991802	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs572745471	chr6:14991818-14991819	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs541352100	chr6:14991868-14991869	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs35084905	chr6:14991919-14991920	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs574045186	chr6:14991966-14991967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
small cell lung cancer	20016488	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian cancer	21720365	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bladder cancer	21909424	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
abnormal development	18461090	CNVD
Cancer	16790693	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14976000-14993000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:14976000-15006400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:14984600-15006600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:14985000-14992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:14985000-14994600	Weak transcription	Small Intestine	intestine
6	chr6:14985000-14995000	Weak transcription	K562	blood
7	chr6:14985000-15001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:14985000-15003800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:14985200-15006000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:14985600-15003800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:14986600-15018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:14989200-14992400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:14989200-14992600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:14989600-14992200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:14990200-14993200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:14992000-14993600	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:14992200-14993800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:14992400-14997400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:14992600-14997400	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr6:14993000-14993600	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr6:14993200-14996000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:14993600-14994800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:14993600-15007200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:14993800-14994600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:14994600-14994800	Active TSS	Small Intestine	intestine
26	chr6:14994600-14997600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:14994800-14995400	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr6:14995000-14995600	Enhancers	K562	blood
29	chr6:14995200-14995600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:14995400-14996000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:14995400-14996200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:14995600-14997200	Weak transcription	K562	blood
33	chr6:14996000-14996200	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr6:14996000-15001800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:14996200-14996400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:14996200-15003600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:14996400-14996600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:14996400-14999200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:14997000-14997400	Enhancers	Spleen	Spleen
40	chr6:14997200-14997600	Enhancers	Esophagus	oesophagus
41	chr6:14997200-14997800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:14997200-14998000	Enhancers	K562	blood
43	chr6:14997400-15001400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:14997400-15002200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:14997600-14998000	Enhancers	Stomach Mucosa	stomach
46	chr6:14997600-15001400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links