Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14988507..14990361-chr6:14990397..14992385,2	K562	blood:
2	chr6:14989019..14991902-chr6:15089508..15091769,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234261	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10949270	0.83[ASN][1000 genomes]
rs11755277	0.87[ASN][1000 genomes]
rs12193983	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12196558	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12201053	0.83[ASN][1000 genomes]
rs12215781	0.83[ASN][1000 genomes]
rs1555642	0.83[EUR][1000 genomes]
rs2762329	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28520668	0.80[EUR][1000 genomes]
rs432442	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57581425	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58479121	0.86[EUR][1000 genomes]
rs672419	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6908722	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7750689	0.86[EUR][1000 genomes]
rs7760736	0.87[EUR][1000 genomes]
rs7766473	0.88[EUR][1000 genomes]
rs7768948	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7770884	0.88[ASN][1000 genomes]
rs7771215	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs837170	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv981299	chr6:14990645-14997807	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14976000-14993000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:14976000-15006400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:14984600-15006600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:14985000-14992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:14985000-14994600	Weak transcription	Small Intestine	intestine
6	chr6:14985000-14995000	Weak transcription	K562	blood
7	chr6:14985000-15001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:14985000-15003800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:14985200-15006000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:14985600-15003800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:14986600-15018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:14989200-14992400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:14989200-14992600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:14989600-14992200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:14990200-14993200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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