Variant report

Variant	rs7768948
Chromosome Location	chr6:14975497-14975498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11752683	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12193983	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12196558	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12211166	0.88[JPT][hapmap]
rs1555642	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2661089	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2762329	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28520668	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs432442	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4712245	0.88[JPT][hapmap]
rs57581425	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58479121	0.96[EUR][1000 genomes]
rs672419	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6908722	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7750689	0.96[EUR][1000 genomes]
rs7755150	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7760736	0.96[EUR][1000 genomes]
rs7766473	0.96[EUR][1000 genomes]
rs7771215	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs837170	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14968600-14986400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14974400-14976000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:14974400-14976200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:14974600-14975600	Enhancers	K562	blood
5	chr6:14974600-14976000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:14974600-14976000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:14974600-14976000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:14974600-14976000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:14974600-14976000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:14974800-14975600	Enhancers	Fetal Heart	heart
11	chr6:14975000-14975800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:14975000-14976000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:14975200-14975600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:14975200-14975800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:14975200-14976000	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:14975200-14976000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:14975200-14977400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:14975400-14975600	Enhancers	Stomach Mucosa	stomach
19	chr6:14975400-14976000	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:14975400-14976200	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr6:14975400-14976200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:14975400-14976200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:14975400-14976200	Enhancers	GM12878-XiMat	blood
24	chr6:14975400-14977200	Enhancers	Monocytes-CD14+_RO01746	blood

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