Variant report

Variant	rs28520668
Chromosome Location	chr6:14951233-14951234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14757827..14760389-chr6:14950960..14952812,2	MCF-7	breast:
2	chr6:14947657..14950233-chr6:14950438..14953258,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12173704	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12176066	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12193983	0.85[EUR][1000 genomes]
rs12196558	0.83[EUR][1000 genomes]
rs1555642	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045222	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2045223	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2661089	0.80[EUR][1000 genomes]
rs2762323	0.94[ASN][1000 genomes]
rs2762329	0.85[EUR][1000 genomes]
rs371601	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs379905	0.84[ASN][1000 genomes]
rs396228	0.84[ASN][1000 genomes]
rs404305	0.84[ASN][1000 genomes]
rs407140	0.84[ASN][1000 genomes]
rs409391	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4285324	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4299834	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs432319	0.84[ASN][1000 genomes]
rs432442	0.87[EUR][1000 genomes]
rs447977	0.91[ASN][1000 genomes]
rs4515392	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4574648	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4715937	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4715938	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57581425	0.83[EUR][1000 genomes]
rs58479121	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs672419	0.87[EUR][1000 genomes]
rs6908722	0.84[EUR][1000 genomes]
rs6917587	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6918362	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922975	0.85[EUR][1000 genomes]
rs6930788	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6931541	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6942359	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7750689	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7755150	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7760736	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7766473	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7768948	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7771215	0.84[EUR][1000 genomes]
rs837170	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9349961	0.84[EUR][1000 genomes]
rs9349962	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9370783	0.82[ASN][1000 genomes]
rs9396537	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9396538	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14933600-14954000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14933600-14964800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14933800-14969600	Weak transcription	Right Atrium	heart
4	chr6:14946600-14965000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:14948400-14953400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:14949200-14954000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:14949200-14955400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:14949400-14954200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:14951200-14951400	Flanking Active TSS	K562	blood
10	chr6:14951200-14952200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links