Variant report

Variant	rs12196558
Chromosome Location	chr6:14973462-14973463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11752683	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12193983	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1555642	0.87[EUR][1000 genomes]
rs2661089	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2762329	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28520668	0.83[EUR][1000 genomes]
rs432442	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57581425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58479121	0.90[EUR][1000 genomes]
rs672419	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6908722	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7750689	0.90[EUR][1000 genomes]
rs7755150	0.82[EUR][1000 genomes]
rs7760736	0.91[EUR][1000 genomes]
rs7766473	0.92[EUR][1000 genomes]
rs7768948	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7771215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs837170	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14968200-14974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:14968600-14974600	Weak transcription	K562	blood
3	chr6:14968600-14986400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:14968800-14974600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:14970400-14974600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:14970400-14975000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:14970600-14974400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:14970600-14974600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:14970600-14975000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:14970800-14974600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:14973200-14975400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:14973400-14975200	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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