Variant report

Variant	rs7766473
Chromosome Location	chr6:14966802-14966803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14847583..14849591-chr6:14964580..14967097,2	K562	blood:
2	chr6:14959260..14960865-chr6:14965257..14968015,3	K562	blood:
3	chr6:14959260..14962811-chr6:14965257..14968674,4	K562	blood:
4	chr6:14960895..14963438-chr6:14965726..14968229,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11752683	0.85[EUR][1000 genomes]
rs12193983	0.94[EUR][1000 genomes]
rs12196558	0.92[EUR][1000 genomes]
rs1555642	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2661089	0.88[EUR][1000 genomes]
rs2762329	0.94[EUR][1000 genomes]
rs28520668	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs379905	0.94[ASN][1000 genomes]
rs396228	0.94[ASN][1000 genomes]
rs404305	0.94[ASN][1000 genomes]
rs407140	0.94[ASN][1000 genomes]
rs432319	0.94[ASN][1000 genomes]
rs432442	0.96[EUR][1000 genomes]
rs447977	0.84[ASN][1000 genomes]
rs57581425	0.92[EUR][1000 genomes]
rs58479121	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs672419	0.96[EUR][1000 genomes]
rs6908722	0.92[EUR][1000 genomes]
rs7750689	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755150	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7760736	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768948	0.96[EUR][1000 genomes]
rs7771215	0.93[EUR][1000 genomes]
rs837170	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14933800-14969600	Weak transcription	Right Atrium	heart
2	chr6:14964800-14967000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:14964800-14967000	Enhancers	Fetal Muscle Leg	muscle
4	chr6:14964800-14968000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:14964800-14968600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:14964800-14968600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:14965000-14968400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:14965000-14968600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr6:14965000-14968600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:14965000-14968600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:14965200-14967000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:14965200-14967000	Enhancers	NHDF-Ad	bronchial
13	chr6:14965200-14967800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:14965200-14968200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:14965600-14967000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:14965800-14968000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:14966000-14967000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:14966200-14967000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:14966200-14967000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:14966200-14968800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:14966400-14967400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:14966400-14967400	Enhancers	K562	blood
23	chr6:14966400-14968000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:14966600-14967200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:14966600-14968600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:14966800-14967000	Enhancers	Esophagus	oesophagus
27	chr6:14966800-14967600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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