Variant report

Variant	rs4712245
Chromosome Location	chr6:15017691-15017692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15014425..15017861-chr6:15018779..15021583,3	K562	blood:
2	chr6:14996389..14999164-chr6:15016282..15017980,2	K562	blood:
3	chr6:15016924..15018771-chr6:15065604..15067583,2	K562	blood:
4	chr6:15016604..15018126-chr6:15247080..15249476,2	K562	blood:
5	chr6:14920549..14922410-chr6:15017214..15019242,2	K562	blood:
6	chr6:15016833..15018489-chr6:15081774..15084228,2	K562	blood:
7	chr6:15016833..15019664-chr6:15022406..15025151,2	K562	blood:
8	chr6:15016484..15018305-chr6:15062981..15064524,2	K562	blood:
9	chr6:15016388..15019055-chr6:15245142..15248397,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10949270	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755277	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12201053	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12211166	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12215781	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7770884	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv970723	chr6:14997807-15023765	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14986600-15018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15014000-15017800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15017000-15019000	Enhancers	Fetal Thymus	thymus
4	chr6:15017000-15019600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:15017200-15017800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:15017200-15017800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:15017200-15017800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:15017200-15017800	Enhancers	Fetal Heart	heart
9	chr6:15017200-15019600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:15017400-15017800	Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr6:15017400-15017800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:15017400-15017800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:15017400-15017800	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr6:15017400-15017800	Active TSS	NHDF-Ad	bronchial
15	chr6:15017400-15018000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:15017400-15018000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:15017400-15018200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr6:15017400-15018200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr6:15017400-15018200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:15017400-15018200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
21	chr6:15017400-15018200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:15017400-15018200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:15017400-15018400	Enhancers	Thymus	Thymus
24	chr6:15017400-15018400	Flanking Active TSS	K562	blood
25	chr6:15017600-15017800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:15017600-15017800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:15017600-15017800	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr6:15017600-15017800	Active TSS	Duodenum Mucosa	Duodenum
29	chr6:15017600-15017800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr6:15017600-15017800	Flanking Active TSS	Right Atrium	heart
31	chr6:15017600-15018000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:15017600-15018000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:15017600-15018000	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr6:15017600-15018000	Enhancers	Adipose Nuclei	Adipose
35	chr6:15017600-15018000	Active TSS	Brain Angular Gyrus	brain
36	chr6:15017600-15018000	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr6:15017600-15018000	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr6:15017600-15018000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr6:15017600-15018000	Flanking Active TSS	Brain Substantia Nigra	brain
40	chr6:15017600-15018000	Flanking Active TSS	Fetal Lung	lung
41	chr6:15017600-15018000	Flanking Active TSS	Ovary	ovary
42	chr6:15017600-15018000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr6:15017600-15018000	Enhancers	GM12878-XiMat	blood
44	chr6:15017600-15018200	Enhancers	H1 Cell Line	embryonic stem cell
45	chr6:15017600-15018200	Enhancers	H9 Cell Line	embryonic stem cell
46	chr6:15017600-15018200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:15017600-15018200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:15017600-15018200	Enhancers	Primary B cells from peripheral blood	blood
49	chr6:15017600-15018200	Enhancers	Primary hematopoietic stem cells	blood
50	chr6:15017600-15018200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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